Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26b23
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 31 0.21
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.5
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 27 1.9
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.6
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 4.5
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 26 5.9
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 7.9
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 7.9
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 64 DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 186
+K+ VV EK P + T E PSE Y+ EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 379 DALVADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQ 558
D V+DE L +A + + L + E +P + S FK+ H ++KI +++L
Sbjct: 801 DTFVSDELNSLCATNAYNRISTFLRMQIDEECKPCQFKKSNFKE----HFQNKIYQEQLD 856
Query: 559 KI 564
K+
Sbjct: 857 KL 858
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 103 PDSMATITMKPEYPPSEVYSTSEPPP 180
P +T + P PP+ STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 103 PDSMATITMKPEYPPSEVYSTSEPPP 180
P +T + P PP+ STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 412 ANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKI 564
+ A ++ +PP SSV T+ P+S S+ D LN E+ + E K +I
Sbjct: 77 SEAPRINEIPPSTSSVEKSTTIPNS---SVVLDHLLNEGENTLEEVKPSEI 124
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 91 KEHQPDSMATITMKPEYPPSEVYSTS 168
+ + DS +TI +PEYPP +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 136 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARS 303
E+ + + S PP + + STSV A A+ +V S+ LG+ +S A ++
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNTSSTAQKN 270
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 170 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 81
S V +G Y+GFIV++A+ S F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 150 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 52
RRRIFR H +W+ FF L++ +IY+
Sbjct: 32 RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 100 QPDSMATITMKPEYPPSEVYSTSEPP 177
QP + +T+ P PPS Y+T++PP
Sbjct: 86 QPGNASTMYASP--PPSSNYNTAKPP 109
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 234 NSGRF-LLHLGNLYIGFELGSSSFIMPSARAAGCNARQRTRFGRQSL 371
NS R +L L LY+GF S ++ +A R++ RFG++ +
Sbjct: 6 NSPRLNILELVLLYVGFFSIGSLNLLQKRKATSDPYRRKNRFGKEPI 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,521
Number of Sequences: 5004
Number of extensions: 54261
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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