Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26b16
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41556-9|AAK39192.1| 692|Caenorhabditis elegans Potassium chann... 34 0.12
U41556-8|AAM51518.1| 740|Caenorhabditis elegans Potassium chann... 34 0.12
AY572974-1|AAT77227.1| 692|Caenorhabditis elegans KQT-1 potassi... 34 0.12
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z83228-3|CAB60998.1| 536|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF145377-1|AAD39816.1| 536|Caenorhabditis elegans MOM-4 protein. 29 3.5
AF143242-1|AAD37359.1| 536|Caenorhabditis elegans protein kinas... 29 3.5
U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical p... 29 4.7
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 28 8.2
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 28 8.2
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 28 8.2
>U41556-9|AAK39192.1| 692|Caenorhabditis elegans Potassium channel,
kvqlt familyprotein 1, isoform a protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 242 MTFKN-ATPKIVQRVWNDMHEYLDDQPNWNAATLHLSM 352
+T+KN T + +R+ N MH +L+ W AAT HL++
Sbjct: 71 LTYKNYRTDQRFRRMQNKMHNFLERPRGWKAATYHLAV 108
>U41556-8|AAM51518.1| 740|Caenorhabditis elegans Potassium channel,
kvqlt familyprotein 1, isoform b protein.
Length = 740
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 242 MTFKN-ATPKIVQRVWNDMHEYLDDQPNWNAATLHLSM 352
+T+KN T + +R+ N MH +L+ W AAT HL++
Sbjct: 119 LTYKNYRTDQRFRRMQNKMHNFLERPRGWKAATYHLAV 156
>AY572974-1|AAT77227.1| 692|Caenorhabditis elegans KQT-1 potassium
channel protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 242 MTFKN-ATPKIVQRVWNDMHEYLDDQPNWNAATLHLSM 352
+T+KN T + +R+ N MH +L+ W AAT HL++
Sbjct: 71 LTYKNYRTDQRFRRMQNKMHNFLERPRGWKAATYHLAV 108
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 459 TLYPSSSFN*NWSTAPSFS**PTATWESRHYQPELTNHRIVQNWTRSPQNSPSATA 626
T+ SS+ + N S + +A H+QP +H +QN PQN SATA
Sbjct: 1587 TMSQSSTKSSNVSVSSRHRDNQSAPPRHHHHQPHPPHHPHLQNHYHPPQNHTSATA 1642
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 459 TLYPSSSFN*NWSTAPSFS**PTATWESRHYQPELTNHRIVQNWTRSPQNSPSATA 626
T+ SS+ + N S + +A H+QP +H +QN PQN SATA
Sbjct: 1748 TMSQSSTKSSNVSVSSRHRDNQSAPPRHHHHQPHPPHHPHLQNHYHPPQNHTSATA 1803
>Z83228-3|CAB60998.1| 536|Caenorhabditis elegans Hypothetical
protein F52F12.3 protein.
Length = 536
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 329 HSSSAGHQDTRACRSILSERF*ASHF*TSCPYTFFRTSCSTCNRSSMASLSLHRFRNTDL 150
HS+S H+D + +LS+R+ +T S T NR + +++ FR
Sbjct: 168 HSNSQVHRDLKLQNMLLSDRYRTMKLCDFGTFTSMHQS-MTSNRGTPITMAPEVFRCEQY 226
Query: 149 PVKSDIF 129
+KSDI+
Sbjct: 227 NMKSDIY 233
>AF145377-1|AAD39816.1| 536|Caenorhabditis elegans MOM-4 protein.
Length = 536
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 329 HSSSAGHQDTRACRSILSERF*ASHF*TSCPYTFFRTSCSTCNRSSMASLSLHRFRNTDL 150
HS+S H+D + +LS+R+ +T S T NR + +++ FR
Sbjct: 168 HSNSQVHRDLKLQNMLLSDRYRTMKLCDFGTFTSMHQS-MTSNRGTPITMAPEVFRCEQY 226
Query: 149 PVKSDIF 129
+KSDI+
Sbjct: 227 NMKSDIY 233
>AF143242-1|AAD37359.1| 536|Caenorhabditis elegans protein kinase
MOM-4 protein.
Length = 536
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 329 HSSSAGHQDTRACRSILSERF*ASHF*TSCPYTFFRTSCSTCNRSSMASLSLHRFRNTDL 150
HS+S H+D + +LS+R+ +T S T NR + +++ FR
Sbjct: 168 HSNSQVHRDLKLQNMLLSDRYRTMKLCDFGTFTSMHQS-MTSNRGTPITMAPEVFRCEQY 226
Query: 149 PVKSDIF 129
+KSDI+
Sbjct: 227 NMKSDIY 233
>U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical
protein C18A3.2 protein.
Length = 363
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 248 TSCPYTFFRTSCSTCNRSSMASL 180
TS PYTF RT C +++S++ L
Sbjct: 22 TSIPYTFLRTCCVNASKTSISFL 44
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 198 ILHGFPITSSISKYGSSCKV*HILLFFW 115
+ HGF + + I Y + + ++ LFFW
Sbjct: 58 VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 198 ILHGFPITSSISKYGSSCKV*HILLFFW 115
+ HGF + + I Y + + ++ LFFW
Sbjct: 58 VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 198 ILHGFPITSSISKYGSSCKV*HILLFFW 115
+ HGF + + I Y + + ++ LFFW
Sbjct: 58 VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,469,951
Number of Sequences: 27780
Number of extensions: 423356
Number of successful extensions: 1152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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