Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26b15
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0392 + 17251536-17252336                                         29   2.0  
03_06_0163 - 32105234-32105977                                         29   2.0  
06_01_0082 + 656362-657798                                             29   3.5  
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693     29   3.5  
08_01_0637 + 5537421-5539547                                           28   6.1  

>09_04_0392 + 17251536-17252336
          Length = 266

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 364 CGTECVRCGADGCVKC 411
           CG  C  CG DGC+ C
Sbjct: 61  CGEACALCGIDGCLGC 76


>03_06_0163 - 32105234-32105977
          Length = 247

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 358 TRCGTECVRCGADGCVKCLXLLVWPGGTCTHECPSGTRESWA-HDDHL 498
           TRC   C   G      C+ LLV P  T    C  G  E W  HDD +
Sbjct: 85  TRCS--CQLSGKPSLPGCIVLLVEPVATNIWYCRIGDDEEWTRHDDDI 130


>06_01_0082 + 656362-657798
          Length = 478

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = -1

Query: 561 TTRASDQQLIISVTRIADSAHEVVIVRPRLPGSRGTLVCACAARPDQEXKALHAPVRTA- 385
           +TRAS     +SV    DS+H   ++ P  P S+ + +   A R  +  K+L   +R+A 
Sbjct: 52  STRASLLLTAVSVLAADDSSHRATLLLPDSPHSQASPLSPSALR--RHYKSLSESLRSAP 109

Query: 384 -THALCAASCVVELWRR 337
            + +   +S V E  RR
Sbjct: 110 PSSSPAVSSAVKEALRR 126


>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
          Length = 661

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 409 CLXLLVWPGGTCTHECPSGTRESWAHDDHLMG 504
           C+ LLV P GT    C  G  E W   D+ +G
Sbjct: 446 CVVLLVEPVGTIIWYCHIGDDEKWVEHDYDIG 477


>08_01_0637 + 5537421-5539547
          Length = 708

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 161 HTVKIIASLIRRIQWCR--WSVTILAQHNIL 75
           HT+  +  L+R  QW R  WS + + QHN+L
Sbjct: 353 HTITSLRRLVRAAQWRRRYWSCS-MGQHNLL 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,842
Number of Sequences: 37544
Number of extensions: 285785
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)