Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26b13
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283... 232 2e-61
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 221 3e-58
02_02_0370 + 9509212-9509293,9509905-9511721 29 2.6
03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594... 29 3.5
11_03_0132 - 10505910-10505996,10507419-10507499,10509582-105105... 29 4.6
04_01_0356 + 4663723-4664253 28 6.1
03_06_0191 - 32228642-32228949,32229028-32230567 28 6.1
08_01_0776 + 7533790-7533984,7534234-7534419,7534542-7534631,753... 28 8.0
07_03_1789 - 29527145-29527204,29527277-29527358,29527457-295275... 28 8.0
07_03_0394 - 17633753-17636788 28 8.0
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 28 8.0
>04_04_1572 -
34527730-34527859,34528077-34528136,34528253-34528375,
34528506-34528960,34529343-34529876,34530638-34531501
Length = 721
Score = 232 bits (567), Expect = 2e-61
Identities = 100/172 (58%), Positives = 138/172 (80%)
Frame = +1
Query: 172 LSSDKQLTFIKLSVLSMAAILSFATRLFSVLRFESVIHEFDPYFNYRTTRYLTEEGFYNF 351
L + +Q +++S L++ +L+F RLFSVLR+ES+IHEFDPYFNYRTT +L++ GF F
Sbjct: 19 LKTKQQELLLRVSALALIYVLAFVVRLFSVLRYESMIHEFDPYFNYRTTLFLSDHGFSEF 78
Query: 352 HNWFDDRAWYPLGRIIGGTIYPGLMVTSATLYNIMQYLNITIDIRNVCVFLAPFFSSLTT 531
NWFD +WYPLGR++GGT++PGLMVT+A L+ +++ L++ + IR VCV APFF++ TT
Sbjct: 79 WNWFDFESWYPLGRVVGGTLFPGLMVTAALLHRLLRALSLAVHIREVCVLTAPFFAANTT 138
Query: 532 IVTYLLTKELKNEGAGLVAAAMIAIVPGYISRSVAGSYDNEGIAIFCMLLTY 687
+V Y +E+ + GAGLVAAA+IA+ PGYISRSVAGSYDNEG+AIF +LLT+
Sbjct: 139 LVAYAFGREIWDSGAGLVAAALIAVCPGYISRSVAGSYDNEGVAIFALLLTF 190
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 221 bits (541), Expect = 3e-58
Identities = 94/158 (59%), Positives = 126/158 (79%)
Frame = +1
Query: 214 LSMAAILSFATRLFSVLRFESVIHEFDPYFNYRTTRYLTEEGFYNFHNWFDDRAWYPLGR 393
L + +L+F+ RLFSV+++ESVIHEFDPYFN+R T++L++ G Y F NWFDDR WYPLGR
Sbjct: 29 LLLIGVLAFSIRLFSVIKYESVIHEFDPYFNFRVTQFLSKNGIYEFWNWFDDRTWYPLGR 88
Query: 394 IIGGTIYPGLMVTSATLYNIMQYLNITIDIRNVCVFLAPFFSSLTTIVTYLLTKELKNEG 573
+IGGT+YPGL +T+ T++ ++ LNI + + VCVF AP FS+ + TYLLTKE K G
Sbjct: 89 VIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSANASWATYLLTKEAKGTG 148
Query: 574 AGLVAAAMIAIVPGYISRSVAGSYDNEGIAIFCMLLTY 687
AGL+AAA++A+VP YISRSVAGSYDNE +AIF ++ T+
Sbjct: 149 AGLMAAAILAMVPSYISRSVAGSYDNEAVAIFALIFTF 186
>02_02_0370 + 9509212-9509293,9509905-9511721
Length = 632
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = -3
Query: 504 QEHTYISDVNCYV*VLHYIVKSGRSHHQARVDGTSNNTT*RIPCSIVKPVVEVIKSLFSK 325
QEH + D+N Y +L+ + K+G H + N+T +KP ++ S
Sbjct: 538 QEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNST-------IKPDAVSYNTVLSA 590
Query: 324 ISRRSIVEVGIKLM 283
+S + E +LM
Sbjct: 591 LSHAGMFEEAAELM 604
>03_02_0150 +
5941560-5941739,5942027-5942118,5942232-5942298,
5942401-5942523,5942692-5942784,5943149-5943278,
5943483-5943564,5943682-5943814,5944246-5944451,
5944538-5944663,5945024-5945333,5945518-5945643,
5946151-5946456
Length = 657
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -1
Query: 317 VVL*LK*GSNSWITLSKRRTENKRVAKDKIAAIDNTESFINVSCLSEDKYGNLDLLCVSA 138
++L L+ W+TL+ N + +KD + + +F + +C SE ++ LLC +
Sbjct: 55 LLLGLEGQDREWVTLTYN---NPKPSKDDWIGVFSPANFSDSTCPSESQWVEPPLLCTAP 111
Query: 137 VILIF 123
+ IF
Sbjct: 112 IKFIF 116
>11_03_0132 -
10505910-10505996,10507419-10507499,10509582-10510528,
10510645-10510742,10511273-10511442,10511551-10511832,
10514544-10514936
Length = 685
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 361 FDDRAWYPLGRIIGGTIYPGLMVTSATLYNIMQYLNITIDIRNVCVFLAP 510
FDDR W+ +G+ IG + LYN+ Q +TI NV ++ P
Sbjct: 121 FDDRLWFRIGQAIG--------TEARALYNLGQAEGLTIWSPNVNIYRDP 162
>04_01_0356 + 4663723-4664253
Length = 176
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 412 YPGLMVTSATLYNIMQYLNITIDIRNVCVFL---APFFSSLTTIVTY--LLTKELKNEGA 576
YP L+ S Y + Y N T +VC+ + F+ S T+++ + L+ ++ + GA
Sbjct: 57 YPVLLDKSPWRYYVFYYCNATSFASSVCIIVLLATNFYLSHTSVMVFNVLVALDMASLGA 116
Query: 577 GLVAAA 594
VA +
Sbjct: 117 AFVAGS 122
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +1
Query: 124 KIKMTAETQSKSRLPYLSSDKQLTFIKLSVLSMAAILSFATRLFSVLRFESVIHEFDPYF 303
++ + E R + SS + + ++ LS +A L TRL S L + ++H+ P+
Sbjct: 548 EVDLAIEHIKSIRSNFSSSFQNIINELMASLSTSASLQPVTRLISYLNSQGIVHDVGPWM 607
Query: 304 NYRTTRY 324
Y
Sbjct: 608 GLMEHNY 614
>08_01_0776 +
7533790-7533984,7534234-7534419,7534542-7534631,
7535284-7535368,7535759-7535925,7536250-7536438,
7537183-7537296,7537391-7537510,7537590-7537712,
7538217-7538315,7538735-7538791,7539272-7539318,
7539391-7539534,7540028-7540205,7540663-7540743,
7540926-7541009,7541416-7541616
Length = 719
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Frame = +1
Query: 172 LSSDKQLTFIKLSVLSMAAILSFATRLFSVLRFESVIHEFDPYFNYRTTRYLTEEGFYNF 351
L S ++ FI +S L + TRL LR E IH + + +E YN
Sbjct: 188 LWSHFRMAFIPMSYLYGKKFVGPITRLVISLREELHIHPYKKIDWKEARKLCAKEDAYNP 247
Query: 352 HNWFDD---RAWYPLGRIIGGTIYPGLMVTSATLYNIMQYL 465
H W + Y G T +P + LY I ++L
Sbjct: 248 HMWLQECLSDCLYSFGEPF-LTRWPISYMRKRALYQIAEFL 287
>07_03_1789 -
29527145-29527204,29527277-29527358,29527457-29527524,
29527633-29527722,29527811-29527888,29527969-29528064,
29528217-29528300,29528405-29528605,29528967-29529059,
29529573-29529639,29530843-29530901,29531036-29531202,
29531420-29531509,29531868-29531916,29532109-29532174,
29532260-29532434,29532528-29532649
Length = 548
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 331 EEGFYNFHNWFDDRAWYPLGRIIGGTIY 414
E F NW DRA PL +GG+I+
Sbjct: 292 ETAFQAVENWVADRAVLPLENSLGGSIH 319
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 388 GRIIGGTIYPGLMVTSATLYNIMQYLNITI 477
GR+IGG + PG + L MQYL + +
Sbjct: 252 GRVIGGRVIPGEKAGAYDLVEKMQYLFVRV 281
>02_01_0223 +
1453478-1453750,1455788-1456018,1456066-1456200,
1457918-1457971,1458417-1458482,1458593-1458679,
1459338-1459394,1459470-1459500,1459577-1459634,
1459710-1459761,1459881-1459917,1460008-1460210,
1460556-1460633,1460683-1460853,1461126-1461239
Length = 548
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 423 DGDFCHSLQYNAVLKHN 473
DGD CHSL+Y L+ N
Sbjct: 153 DGDICHSLEYQGRLRWN 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,029
Number of Sequences: 37544
Number of extensions: 314051
Number of successful extensions: 656
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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