Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26b12
(279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0020 + 15142402-15143421 27 2.8
04_04_0805 + 28184394-28185239 26 3.7
11_02_0044 - 7695794-7695918,7696353-7696542,7696633-7696759,770... 25 6.5
07_01_0974 + 8211602-8212051 25 6.5
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 25 6.5
02_01_0462 + 3332464-3332470,3333606-3335806 25 6.5
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 25 6.5
11_02_0053 - 7797580-7798731 25 8.6
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 25 8.6
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 25 8.6
>01_04_0020 + 15142402-15143421
Length = 339
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 117 QKKYLPLYAIGKDEWTT----SRPAS*VPPPTLRNDVFPPG*AFARP 245
Q +Y+P+YA DE T S P + PPP+ PP + P
Sbjct: 204 QGQYVPMYAQDSDEKATEKSVSSPVTAYPPPSNAVVAHPPVVPYGAP 250
>04_04_0805 + 28184394-28185239
Length = 281
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 135 LYAIGKDEWTTSRPAS*VPPP 197
L+A KDEW T A +PPP
Sbjct: 261 LFATIKDEWETWLAAGLIPPP 281
>11_02_0044 -
7695794-7695918,7696353-7696542,7696633-7696759,
7701596-7701824,7702973-7703005,7703191-7703281
Length = 264
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 117 QKKYLPLYAIGKDEWTTSRPAS*VPP 194
+K+ L LY + + W + PA VPP
Sbjct: 42 EKENLCLYGLPNETWEVNLPAEEVPP 67
>07_01_0974 + 8211602-8212051
Length = 149
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 233 GSARR-EHVISQGGWRHLR-SGS*SSPLI 153
GSAR H+ GGWRH R S ++PL+
Sbjct: 116 GSARSTSHLPGGGGWRHARLLASAAAPLL 144
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 117 QKKYLPLYAIGKDEWTTSRPAS*VPP 194
+K+ L LY + + W + PA VPP
Sbjct: 4 EKENLCLYGLPNETWDVTLPAEEVPP 29
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 86 ILLHISNKILTKKIPSFIRHW 148
++ +SN +LT IPS I +W
Sbjct: 302 MIFDVSNNMLTGSIPSLISNW 322
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 229 QPGGNTSFLKVGGG 188
QPGG +F KVGGG
Sbjct: 68 QPGGIDAFAKVGGG 81
>11_02_0053 - 7797580-7798731
Length = 383
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 245 WAXKGSARREHVISQGGWRHL 183
W +G+A E + S+GGWR +
Sbjct: 291 WCIEGAAVMEWLGSRGGWREV 311
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 204 SRWVAALKKRVVK*STHLYQWRIKEGIFFVKILLEICNNI 85
+RWV K+ ++K + L+ + ++ L E+C+NI
Sbjct: 2247 TRWVQLFKQLLIKGNQFLWSLHLSWEHTYLPSLGEVCSNI 2286
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 117 QKKYLPLYAIGKDEWTTSRPAS*VPP 194
+K+ L LY + W + PA VPP
Sbjct: 42 EKENLCLYGFPNEHWEVNLPAEEVPP 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,574,699
Number of Sequences: 37544
Number of extensions: 129074
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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