Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26b09
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   1.4  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   1.8  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    24   3.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    23   4.2  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 101 SLQKSNIGTSLMTFLHENLTFCIY 30
           +LQK+ + T L+  L +  + CIY
Sbjct: 830 TLQKNGLATQLLVLLSQKYSTCIY 853


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 113 YYLGSLQKSNIGTSLMTFLHENLTFCIYKW 24
           Y+L  L ++NIG + +  L E+L    Y++
Sbjct: 52  YFLSFLDRANIGNAAVVGLKEDLKLQAYQY 81


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  YKKLNSHEEKSLVTYLCWIFAVIL 106
           +KK    ++KSL+ YL W   + L
Sbjct: 55  FKKTPLFDQKSLILYLLWFSTLTL 78


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 20  ISIYRYKKLNSHEEKSLVTYLCWIFAVILN 109
           +++  +KK + +E+K  V +L W    + N
Sbjct: 247 VTVLSHKKYSINEQKDPVEFLSWFLNTLHN 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,980
Number of Sequences: 5004
Number of extensions: 10810
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)