Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26b08
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   5.4  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   9.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   9.4  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 323 LSSITSFVEE*FNLSLVAPGLEFIFLTF*PFNI 421
           L+S+ SFVE+ F+ S    G+   FLT  P NI
Sbjct: 120 LNSVKSFVEKQFSYSSGTNGILATFLTAIPPNI 152


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 405 NVRNMNSRPGATSDRLNYSSTNDVIDDSPAKIE 307
           N++ MNS     S++ N+ ST  V ++SP  I+
Sbjct: 674 NIQKMNSYHIKDSNKENFLSTTKVNNNSPTTIQ 706


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 572 PCLDHSTTEPKGSHTSAS*SE*TRLSISNLTSNTS 468
           P  D +TT+P    T  S S    LS S+  SNTS
Sbjct: 253 PSTDINTTDPATQTTQVSASNSPALSGSSTPSNTS 287


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 447 VTTNSTANFILNG*NVRNMNSRPGATS 367
           VTT+ T N+  N  N +++  RP  TS
Sbjct: 395 VTTSGTFNYSFNATNPQSILQRPATTS 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,731
Number of Sequences: 5004
Number of extensions: 54793
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)