Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26b08
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0038 - 7631462-7634428,7635975-7636250                           29   4.2  
09_04_0217 + 15739279-15739365,15739460-15739621,15739726-157397...    27   9.7  
09_02_0311 + 7164774-7166327                                           27   9.7  
04_04_1316 - 32590967-32591548,32592042-32592262,32592494-32592869     27   9.7  
02_05_0439 + 29014323-29014853,29014958-29015341,29015422-290155...    27   9.7  

>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 572 GRPASCGGAVEVRVSTVHRTR 634
           G  +SCGG V VRV  +HR R
Sbjct: 26  GSRSSCGGVVGVRVPNLHRQR 46


>09_04_0217 +
           15739279-15739365,15739460-15739621,15739726-15739794,
           15740143-15740275,15740873-15741105,15741462-15741526,
           15743252-15743327,15744076-15744144,15744233-15744409,
           15745349-15745633
          Length = 451

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 483 YKQHIVQCPHLMVTTNSTANFILNG*NVRNMNSRPGATSDRLNYSSTNDVIDDSPAKIET 304
           Y+ H V   +L++     +NF L    V++   R G   DRL Y   N +I       E 
Sbjct: 16  YEGHSVLLYNLLMKGYIKSNFPLGALTVKDEILRQGLKPDRLTY---NTIISACVKSAEI 72

Query: 303 ELPL*YLEE 277
           ++ + +LE+
Sbjct: 73  DMAIRFLED 81


>09_02_0311 + 7164774-7166327
          Length = 517

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 547 SVVEWSRQGPARILRRRCRSEGVD-RSPYEDV 639
           S++E  R+G AR + +R R EGVD    Y D+
Sbjct: 228 SLLERGRRGEARRMLQRVRGEGVDMEDEYNDL 259


>04_04_1316 - 32590967-32591548,32592042-32592262,32592494-32592869
          Length = 392

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/66 (22%), Positives = 28/66 (42%)
 Frame = -2

Query: 604 FDSAAAGCGPAPVLTTQQLNPKDRTRLLRNQSKLAYPYQTLQATHRSMSTSNGHHQFYC* 425
           +D AA           +++  +DR R++  Q+K+    +     +R  +   G H F   
Sbjct: 53  YDEAATVAESVAAAERRRVREEDRARVVEQQTKVRKAKEAYFKKNRKFNPKTGLHYFTRI 112

Query: 424 FYIERL 407
           F+I  L
Sbjct: 113 FFINPL 118


>02_05_0439 +
           29014323-29014853,29014958-29015341,29015422-29015590,
           29015772-29015878,29016034-29016258
          Length = 471

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 483 YKQHIVQCPHLMVTTNSTANFIL 415
           +K HI+ CP +MV++   A F+L
Sbjct: 76  FKTHILGCPCVMVSSPEAARFVL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,881,513
Number of Sequences: 37544
Number of extensions: 335742
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)