Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26b08
         (647 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   2.1  
AJ304410-1|CAC67443.1|  190|Anopheles gambiae calpain protein.         24   3.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   4.8  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
            protein.
          Length = 1077

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -1

Query: 350  LRQTM*LMIVPPKLK-RNYLFN---IWRNFHVNCI 258
            +RQTM  +++ PK+   N   N   +WRN H +C+
Sbjct: 918  IRQTMTEVLLEPKVSLENPSVNWRLLWRNIHRSCL 952


>AJ304410-1|CAC67443.1|  190|Anopheles gambiae calpain protein.
          Length = 190

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 309 QFWRDYHQSHRLSKNSSICHLSP 377
           +FW  Y    R      IC+LSP
Sbjct: 49  EFWMSYRDFTRYFDRMEICNLSP 71


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 387 SRPGATSDRLNYSSTNDVIDD--SPAKIETE 301
           + PG   +RL  S  NDVI+D  SP   E +
Sbjct: 503 NNPGKVYERLLLSRINDVIEDPESPRLAENQ 533


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,931
Number of Sequences: 2352
Number of extensions: 13973
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)