Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26b05
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 35 0.014
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 34 0.018
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 34 0.024
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 28 1.6
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 27 2.1
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 26 4.8
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 26 4.8
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 26 4.8
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 26 4.8
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 26 4.8
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.3
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 34.7 bits (76), Expect = 0.014
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 86 EWYTPAEVAVHNKATDCWVSINGKVLDLTSWLQD 187
+++ P E+ HN + D ++ INGKV D++++ D
Sbjct: 4 KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADD 37
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 34.3 bits (75), Expect = 0.018
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 41 QKISIKDNPMKYTKQEWYTPAEVAVHNKATDCWVSINGKVLDLTSWL 181
Q +S + P+ TK+E +A H DCW++I GKV +++++L
Sbjct: 63 QNLSGVEKPIPVTKEE------LAKHKTKEDCWIAIRGKVYNVSAYL 103
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 95 TPAEVAVHNKATDCWVSINGKVLDLTSWL 181
T E+A H DCW++I GKV ++T++L
Sbjct: 73 TAEELAKHCSPDDCWMAIRGKVYNVTAYL 101
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 441 WL*PWRW*AVVQPTIGWVY*IHSSPLNQW 355
W PW V+ +GWV + P NQW
Sbjct: 149 WHAPWTLMRVISGHLGWVRCVDVEPGNQW 177
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 542 PIRITNSLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWRYLGRSIKYNKTLSENG 718
P++ T S S + +VC E Y I Y SH ++Y + + N ++ENG
Sbjct: 27 PLKNTFSKRNSILNNQVCFEAIKY-IQRHYFSSQSHHVTYLHQSPLEKLVSNGVVNENG 84
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 83 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 159 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 235 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 311 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 SLTGSTVTLEVCSEETIYQIMMRYLRHNSHMMSYTWR--YLGRSIKYNKTLSENGI 721
+LTG T+TLEV S +TI + + ++ + R + G+ ++ +TLS+ I
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSK-IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 389 THPIVGCTTAYQRHGHSHQQPVVPSTRWRPL 481
T + CT+ + + H +PV+P T++ L
Sbjct: 842 TSDLFACTSVLKTYLHRLPEPVIPGTQYEEL 872
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,744
Number of Sequences: 5004
Number of extensions: 65671
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -