Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26b05
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099917-6|AAC68780.1| 264|Caenorhabditis elegans Hypothetical ... 38 0.006
AL032654-5|CAD91715.2| 516|Caenorhabditis elegans Hypothetical ... 31 1.1
AL032654-4|CAA21721.2| 552|Caenorhabditis elegans Hypothetical ... 31 1.1
Z78539-6|CAB01732.2| 134|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical pr... 29 2.6
U40959-3|AAA81767.2| 445|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF003141-8|AAK21480.1| 141|Caenorhabditis elegans Hypothetical ... 29 3.4
AC006795-1|AAF59492.2| 435|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81052-7|CAJ58492.1| 103|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical p... 28 7.8
Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AF099917-6|AAC68780.1| 264|Caenorhabditis elegans Hypothetical
protein F54D10.7 protein.
Length = 264
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 473 RPLTKPWWQDESLVVGKVTAKTRPIRITNSLTGSTVTLEVCSEETIYQIMMRYLRHNSHM 652
R K +D + K+ +K I+ L GS + +E+ S +TIY + M L+H
Sbjct: 161 REFFKKVTEDTQAIRRKIGSKN--IKFNVILHGSRIPMELDSLDTIYTVGMALLKHGGLA 218
Query: 653 MSYTWRYLG-RSIKYNKTLSENGIPD 727
+ L + ++YN+TL E GI D
Sbjct: 219 LHRQRLMLNDKELQYNQTLEEAGIKD 244
>AL032654-5|CAD91715.2| 516|Caenorhabditis elegans Hypothetical
protein Y52B11A.3b protein.
Length = 516
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 104 EVAVHNKATDCWVSINGKVLDLTSWL 181
E+ HN DCWV + G V D+T +L
Sbjct: 25 ELMKHNTKDDCWVHLFGIVYDVTKYL 50
>AL032654-4|CAA21721.2| 552|Caenorhabditis elegans Hypothetical
protein Y52B11A.3a protein.
Length = 552
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 104 EVAVHNKATDCWVSINGKVLDLTSWL 181
E+ HN DCWV + G V D+T +L
Sbjct: 61 ELMKHNTKDDCWVHLFGIVYDVTKYL 86
>Z78539-6|CAB01732.2| 134|Caenorhabditis elegans Hypothetical
protein C31E10.7 protein.
Length = 134
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 95 TPAEVAVHNKATDCWVSINGKVLDLTSWLQD 187
T E+A HN W+ I KV D+T +L +
Sbjct: 8 TLKEIAEHNTNKSAWLVIGNKVFDVTKFLDE 38
>Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical
protein F17A2.3 protein.
Length = 463
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = -2
Query: 321 IARLFLSQYGNPRLKQGQVSTQSSSQYQFLILHEHALMHLQTLNSSCNQEVKSKTFPLME 142
I+ L + + G + V + SS++ L E +HL S N+ +KSK PL+E
Sbjct: 285 ISELDMGEQGAEQRVTRSVHSTSSNE-----LSEPIEVHLLVDKSEVNRHIKSKEHPLLE 339
Query: 141 TQQSVALL*TATSA 100
Q A + A+ A
Sbjct: 340 DQNFTACIPEASPA 353
>U40959-3|AAA81767.2| 445|Caenorhabditis elegans Hypothetical
protein B0310.3 protein.
Length = 445
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 326 ILAYAGKDLSHWFKGDEWIQYTHPIVGCTTAYQRHGHS 439
+ YAG ++ KG EW +T P +G T Q S
Sbjct: 52 VTTYAGVVAQYFKKGAEWFNFTTPSIGTFTNEQNEEDS 89
>AF003141-8|AAK21480.1| 141|Caenorhabditis elegans Hypothetical
protein W02D3.1 protein.
Length = 141
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 104 EVAVHN---KATDCWVSINGKVLDLTSWLQD 187
EV+ HN CW+ I+GKV D+T +L +
Sbjct: 11 EVSKHNWEDADQSCWIVISGKVYDVTKFLNE 41
>AC006795-1|AAF59492.2| 435|Caenorhabditis elegans Hypothetical
protein Y50D4B.7 protein.
Length = 435
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 368 GDEWIQYTHPIVGCTTAYQRHGHSHQQP 451
G+ + ++T+ I+ T +Y+RHG S +P
Sbjct: 77 GENYAKFTYDIISNTYSYKRHGGSSFEP 104
>Z81052-7|CAJ58492.1| 103|Caenorhabditis elegans Hypothetical
protein D2023.1b protein.
Length = 103
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 95 TPAEVAVHNKATDCWVSINGKVLDLTSWL 181
T +EV +H DCW+ + V D+T ++
Sbjct: 7 TRSEVNMHCSEDDCWIIVGNYVYDVTKFV 35
>Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 441 WL*PWRW*AVVQPTIGWVY*IHSSPLNQWLRS 346
W PW+ V GWV + P NQW S
Sbjct: 170 WHAPWKLYRVASGHTGWVRAVDVEPGNQWFAS 201
>Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 441 WL*PWRW*AVVQPTIGWVY*IHSSPLNQWLRS 346
W PW+ V GWV + P NQW S
Sbjct: 170 WHAPWKLYRVASGHTGWVRAVDVEPGNQWFAS 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,488,591
Number of Sequences: 27780
Number of extensions: 391355
Number of successful extensions: 1413
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -