Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26b05
(727 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.7
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 24 1.7
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 23 3.9
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 9.0
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 21 9.0
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 21 9.0
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 9.0
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 425 RHGHSHQQPVVPSTRWRPLTKPWWQDESLVVGK 523
R G + VV T W PW + VVG+
Sbjct: 376 RFGIQNGDYVVLETEWSSFINPWTKKLEFVVGQ 408
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 425 RHGHSHQQPVVPSTRWRPLTKPWWQDESLVVGK 523
R G + VV T W PW + VVG+
Sbjct: 82 RFGIQNGDYVVLETEWSSFINPWTKKLEFVVGQ 114
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.6 bits (46), Expect = 3.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 649 VRVVTEITHHYLIDCFLRAN 590
V ++TE + +D FLRAN
Sbjct: 709 VMIITEFMENGSLDTFLRAN 728
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -3
Query: 725 LVCRSRIKFCCILWIVRGNAKCKT 654
L+ S + CC++WI + +T
Sbjct: 67 LLIMSLVGNCCVIWIFSTSKSLRT 90
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 305 RKRRAMTILAYA-GKDLSHWFKGDEWI 382
+++ M++ A G HW +G+ W+
Sbjct: 4 KEKPMMSVTAIIQGTQAQHWSRGNTWL 30
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 305 RKRRAMTILAYA-GKDLSHWFKGDEWI 382
+++ M++ A G HW +G+ W+
Sbjct: 4 KEKPMMSVTAIIQGTQAQHWSRGNTWL 30
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -3
Query: 725 LVCRSRIKFCCILWIVRGNAKCKT 654
L+ S + CC++WI + +T
Sbjct: 67 LLIMSLVGNCCVIWIFSTSKSLRT 90
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,529
Number of Sequences: 438
Number of extensions: 4681
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -