Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26b01
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    27   1.8  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    27   2.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   3.2  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    23   3.5  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    26   4.2  
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...    26   4.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.6  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    26   5.6  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.4  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   9.8  

>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 184 LNELLHATFSIIQSNSVI 131
           LNEL+ +TFSIIQ N  I
Sbjct: 64  LNELIESTFSIIQENVTI 81


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 630 RIRSFKYWSTCKRCTLFYVLHTFAFIF 550
           R+  FK+W +  R TLF ++ +F  IF
Sbjct: 112 RLPEFKFWYSSMRATLFALVASFFRIF 138


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 159 NVACSSSFKFNVPSNNAEGTWGNIFSFRASGASFAERAIS 278
           N A SS F FN+   + E    N FSF   G   A  ++S
Sbjct: 660 NTAGSSPFSFNLTKESKEVPPTNSFSFAKKGKDEANDSLS 699


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 22.6 bits (46), Expect(2) = 3.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 322 LNAISTCREKSIQTEDNLTVLSLAPIDSALVERINLMRRNI 444
           LNA+   + K I   DN TVL L   D  ++      ++ +
Sbjct: 202 LNALCLYQSKLIVGRDNGTVLVLDTSDGKILHEFTAHKKRV 242



 Score = 22.2 bits (45), Expect(2) = 3.5
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 454 TCTVIMSLFRHSQTRVVKDEESETKSNKSFSDKNEGKCVEYIEKSTSFTSRPILKRS 624
           TC V M    +S+ + V+DE ++ +S  S + +   +  E   +  S + +P +KR+
Sbjct: 283 TCMVAMLADSNSEPKNVEDEAAKRQSLDSETSETSSES-ESESEYYSTSKQPPVKRT 338


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 161 IFNYSVEFCNKKIHNFFLNHYFTLESHCIGTI 66
           I NY V  C K+  N  L H+ +    C G +
Sbjct: 101 IGNYGVPDCKKRDENGLLRHFESPHIQCAGVV 132


>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 439 NISCPTCTVIMSLFRHSQTRVV 504
           ++ CP C  I ++F H+QT V+
Sbjct: 34  DVKCPGCFNITTVFSHAQTVVI 55


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 65  FSLIYFKDNNTFDFLEEL 12
           +SL+ F+ N+TFD LE+L
Sbjct: 622 YSLMEFQKNSTFDMLEKL 639


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 651 AFKFIQSRIRSFKYWSTCKRCTLFYVLHTFAFI 553
           A K  + +++   YW+  K C+LF +   F FI
Sbjct: 878 AEKMERGKVKWKVYWTYFKACSLFLIFLYFLFI 910


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +1

Query: 328 AISTCREK-SIQTEDNLTV---LSLAPIDSALVERINLMRRNISCPTCTVIMSLFRHSQT 495
           A S C E   I TE N  +   +     D A     NL +R+  CP C V+  ++  S +
Sbjct: 307 AASCCNEALKILTESNPFLDNYMMYVGEDGAYTYTFNLEKRS-DCPVCGVLSEVYDISAS 365

Query: 496 RVVKDEESETKSNKSFSDKN 555
             V  ++     +KS++ +N
Sbjct: 366 STVTLKDILNHYSKSYNLQN 385


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 478 FRHSQTRVVKDEESETKSNKSFSDKNEGKCVEYIEKSTS 594
           +  S+TR+     S     +SF+DK +   +E +EK  S
Sbjct: 65  YAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIAS 103


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 502 VKDEESETKSNKSFSDKNEGKCVEYI 579
           + +EE     NK+F   +EGKC+  +
Sbjct: 347 ITNEEPLKNINKAFDHMHEGKCIRCV 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,659
Number of Sequences: 5004
Number of extensions: 43979
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)