Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26a22
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0041 - 25120961-25121005,25121143-25121194,25121429-251214...    30   1.5  
03_06_0717 + 35702592-35703152,35703789-35704121                       30   1.5  
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219...    29   2.6  
03_02_0102 + 5637469-5639064                                           29   3.4  
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128...    29   3.4  
11_06_0651 - 25899006-25899275                                         28   6.0  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    28   6.0  
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    28   6.0  

>05_06_0041 -
           25120961-25121005,25121143-25121194,25121429-25121496,
           25122167-25122220,25122473-25122541,25122655-25122714,
           25122876-25123048,25123847-25123920,25124472-25124585,
           25124688-25124754,25124840-25124904,25125504-25125583,
           25125689-25125733,25126235-25126300,25126746-25126901,
           25127292-25127516,25127630-25127672,25127997-25128040,
           25128191-25128263,25130335-25130414
          Length = 550

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 184 SVNFIVPEMFDF-PVYDLVKHVYVDGHTCAE 95
           + +FI+  +  F P +D+ +HV +DGH CAE
Sbjct: 71  NASFIMDMLEAFEPPFDMSQHVDMDGHDCAE 101


>03_06_0717 + 35702592-35703152,35703789-35704121
          Length = 297

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 45  YFRTDINQRWAVTRNARSAHVWPSTYTCLTRSY--TGKSNI 161
           Y  ++  + W   R   S+H W ST  CL RS+   G +N+
Sbjct: 111 YSLSECKRGWLRGRVTHSSHFWASTSACLRRSHVCNGMTNL 151


>04_03_0770 +
           19420249-19420359,19421691-19421763,19421887-19421964,
           19422223-19422284,19422404-19422472,19422672-19422700,
           19422784-19422991,19423071-19423301,19424079-19424132,
           19425344-19426292,19426853-19426863
          Length = 624

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 275 DDYYHNVAQTRAKGPQSKYPSPATENQEYGWYTTPLVKMNRSDKRFYQPKKESENTK 445
           DD  ++ +    + P S  P   +   E  W+++PLVK  + +  F  P K   +T+
Sbjct: 362 DDDKNSTSAHTNRSPHSDQPESKSHVAENLWHSSPLVKGFKPNSMFSGPVKMPSSTE 418


>03_02_0102 + 5637469-5639064
          Length = 531

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 9   NHTFGNSFRFYFYFRTDINQRWAVTRNARSAHVWPSTYTCL 131
           N T  N F   +Y+  DI   W +    RS   +P+T +C+
Sbjct: 355 NATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCM 395


>02_04_0587 +
           24110333-24110584,24111193-24111261,24112347-24112850,
           24113094-24113336
          Length = 355

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 200 IPVTGKFYAAHDQLKAESEEQTKKVDDYYHNV 295
           +PV   F  A  Q+K E+E++T K++D Y ++
Sbjct: 219 LPVLDNFERAKTQIKVETEQET-KINDSYQSI 249


>11_06_0651 - 25899006-25899275
          Length = 89

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +2

Query: 314 GPQSKYPSPATENQEYGWYTTPLVKMNRSDKRFYQPKKESENTKIEIVIL 463
           G  ++ P+ A   +E+G YT+ L++     K    P ++  + +  ++IL
Sbjct: 38  GDVTRAPAAAAAEEEHGHYTSDLLRRAEVSKLSEDPGRDRRDREATMIIL 87


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 294 SPRPGRRDHKANIRRRPLRTKSTAGTPHRSSK*TGAINVSTSR-RRKAKTP 443
           S  P RR  + +  R PLR KS + +P RS   +   +VS S   R++++P
Sbjct: 467 SMSPQRRSARRSKSRSPLREKSVSMSPRRSMSKSLPRSVSRSPVARRSRSP 517


>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 339 RPLRTKSTAGTPHRSSK*TGAINVSTSRRRKAKT 440
           R LR +   GTP+RS      +NV  S   +A+T
Sbjct: 46  RALRAQGLRGTPYRSPAGDAPLNVQLSAEARART 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,616
Number of Sequences: 37544
Number of extensions: 297753
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)