Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26a21
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 226 1e-60
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 226 1e-60
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 142 2e-35
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 141 5e-35
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 141 5e-35
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 86 4e-18
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 37 0.002
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 37 0.002
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 3.2
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 7.3
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 7.3
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 9.7
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 9.7
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 226 bits (553), Expect = 1e-60
Identities = 108/128 (84%), Positives = 113/128 (88%)
Frame = +3
Query: 78 MQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDXX 257
MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSD
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYASLHPRATNCRKTXXGHTXN 437
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYA L PRATNCRK GHT
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 438 LRPKKKIK 461
LRPKKK+K
Sbjct: 121 LRPKKKLK 128
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 226 bits (553), Expect = 1e-60
Identities = 108/128 (84%), Positives = 113/128 (88%)
Frame = +3
Query: 78 MQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDXX 257
MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSD
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYASLHPRATNCRKTXXGHTXN 437
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYA L PRATNCRK GHT
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 438 LRPKKKIK 461
LRPKKK+K
Sbjct: 121 LRPKKKLK 128
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 142 bits (345), Expect = 2e-35
Identities = 72/90 (80%), Positives = 78/90 (86%)
Frame = +3
Query: 36 KKS*ILRVVYFSNTMQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 215
K+S + V+ MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 122
Query: 216 GKQLXDGRTLSDXXIQKESTLHLVLRLRGG 305
GKQL DGRTLSD IQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 142 bits (345), Expect = 2e-35
Identities = 72/90 (80%), Positives = 78/90 (86%)
Frame = +3
Query: 36 KKS*ILRVVYFSNTMQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 215
K+S + V+ MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 198
Query: 216 GKQLXDGRTLSDXXIQKESTLHLVLRLRGG 305
GKQL DGRTLSD IQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 142 bits (345), Expect = 2e-35
Identities = 72/90 (80%), Positives = 78/90 (86%)
Frame = +3
Query: 36 KKS*ILRVVYFSNTMQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 215
K+S + V+ MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 274
Query: 216 GKQLXDGRTLSDXXIQKESTLHLVLRLRGG 305
GKQL DGRTLSD IQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 142 bits (345), Expect = 2e-35
Identities = 72/90 (80%), Positives = 78/90 (86%)
Frame = +3
Query: 36 KKS*ILRVVYFSNTMQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA 215
K+S + V+ MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 350
Query: 216 GKQLXDGRTLSDXXIQKESTLHLVLRLRGG 305
GKQL DGRTLSD IQKESTLHLVLRLRGG
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 141 bits (342), Expect = 5e-35
Identities = 69/76 (90%), Positives = 72/76 (94%)
Frame = +3
Query: 78 MQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDXX 257
MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSD
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGG 305
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 141 bits (342), Expect = 5e-35
Identities = 69/76 (90%), Positives = 72/76 (94%)
Frame = +3
Query: 78 MQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDXX 257
MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSD
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGG 305
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 141 bits (342), Expect = 5e-35
Identities = 69/76 (90%), Positives = 72/76 (94%)
Frame = +3
Query: 78 MQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDXX 257
MQIFVKTLTG TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSD
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGG 305
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 85.8 bits (203), Expect = 4e-18
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +3
Query: 78 MQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDXX 257
M I VKTLTG I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D +
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 258 IQKESTLHLVLRLRGGT 308
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 78 MQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDXX 257
+ + +K + V++ ++ +K I I ++QRLI+AG+ L D +L
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 258 IQKESTLHLVLRL 296
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 105 GXTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDXXIQKESTL 278
G LE+E ++T +K ++ +PP++Q++I G QL D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 158 FDIFDSVGSFHLQCNGXPRKGFDEYLH 78
F ++S+G + L C + FDEYL+
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY 2913
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 241 LFQTXTSRKNPHFTW 285
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 51 LRVVYFSNTMQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 206
L V +S + + KTL +EA++ + +K Q K +PP + L
Sbjct: 618 LEVKNYSKSTDLLKKTLRIPRNDEPLEAANQFDLLKVSPQQKSEVPPKRNEL 669
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 58 TRKIYDFLLPNW 23
TR +YD L+PNW
Sbjct: 826 TRDVYDELVPNW 837
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 230 RWPHSFRXXHPERIHTSPGFET*RRYN-*TFPSHSRH 337
R+ +S+R P+R H SPG RYN + P RH
Sbjct: 223 RYRNSYRPSRPQREH-SPGNYRKERYNVDSRPRRERH 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,307
Number of Sequences: 5004
Number of extensions: 41129
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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