Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26a20
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 30 0.27
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 29 0.62
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.62
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 27 1.9
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 1.9
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 1.9
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 2.5
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 4.4
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 26 4.4
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 26 4.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.8
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.27
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Frame = +3
Query: 96 NNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTS--KPSSKQTS 269
NN E + + + S+QST A + T YD G T + P PSS+ +
Sbjct: 86 NNGAEAAAAAARRIAESLQSTKATSSRTSYDHSEGITSTTSASPPSAPAPPLPPSSEGPA 145
Query: 270 LQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSS 416
+ + ++ T ++ + + ++++ + A +S + S
Sbjct: 146 VDIPPSMADITSKVIEGDGVFMQDVEINNVRNRYILVRASTLSEIENKS 194
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 29.1 bits (62), Expect = 0.62
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 6 HMGYVISRMSENNL*LKFSKSIMDTTPSTENNKREQS---TVSQNLVLNSIQSTAADNDE 176
H+ V ++S + K SKSI+ TTPS + N R S T + L + ++ D DE
Sbjct: 377 HVTLVKGKISTDMEECKVSKSILKTTPSKKANARSVSFTQTTTDTLSESEKFASNVDLDE 436
Query: 177 TF 182
F
Sbjct: 437 NF 438
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.62
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = +3
Query: 60 SKSIMDTTP-STENNKREQSTVSQN-LVLNSIQSTAADNDETFYDQDSGRLV-GTPTLLK 230
S S +TP S ++ S SQ+ ++S ST A + T S + P+L
Sbjct: 270 SSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATS--TLQPTTSSPITTSAPSLSS 327
Query: 231 TIPTSKPSSKQTSLQV--VTKLSQNTDLILT 317
+PT+ PSS T ++V TK +T I+T
Sbjct: 328 ALPTTYPSSLSTEVEVEYFTKTITDTSSIVT 358
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 234 IPTSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEK 347
+ TS PS+ ++ + + LS + DL ++QP+ TA +
Sbjct: 209 VQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHR 246
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 27.5 bits (58), Expect = 1.9
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = +3
Query: 78 TTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSS 257
T TE Q +S ++ S+ STA + + + L + PTS S
Sbjct: 150 TDEDTEEVASIQPALSTSVSSLSLASTAMSKSASASEFSGSSVTKASKKLTSSPTSVASK 209
Query: 258 KQTSLQVVTKLSQNTDLILTQPMITAD----TEKYSDIQGSLQ 374
K T L V+K++ + L +T + D K D + S+Q
Sbjct: 210 KAT-LSSVSKVASTSSLPVTSVSASVDPKSAASKVQDAEFSIQ 251
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 312 LTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSSKQPS 428
L P++ ++ E S + SL++P +STS SK+ S
Sbjct: 123 LQNPVVDSNNEYESKFRLSLEIPPTDFLSTSTELSKRES 161
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 90 TENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIP 239
T+N +RE + VS+ ++ S+++ +D + DSG P +K P
Sbjct: 84 TQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLPIKEPP 133
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 132 LVLNSIQSTAADNDETFYDQDSGRLVGTPTLL 227
LV+N++ + A + +T QD G V PT++
Sbjct: 1172 LVINNVTTAAQNGRDTMAVQDLGVYVAAPTIM 1203
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 78 TTPSTENNKREQSTVSQNLVLNSIQ-STAADNDETFYDQD--SGRLVGTPTLLKTIPTSK 248
++P + + K E + V VL+ +T+A +F S + GTP + K+ P+S
Sbjct: 158 SSPGSNDIKSEFAAVKNEYVLSPTSPTTSAAFPSSFSSLPLVSSKPTGTPFVPKSPPSSS 217
Query: 249 PSSKQTS 269
PS+ S
Sbjct: 218 PSTTNVS 224
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 549 VSHRNYNGSVRSKSPEQKSPK-SLSIKSEYLEERKMET 659
+SH +YN + + E+++PK S+ K + +EE + T
Sbjct: 1 MSHSDYNFDIEQNAFEKEAPKVSIERKGDVVEEEVIAT 38
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +3
Query: 549 VSHRNYNGSVRSKSPEQKSPKSLSIKSEYLEE 644
+S ++Y+ + S PE+K+P+ K +Y+ +
Sbjct: 1 MSAKDYDFDIESVLPEEKAPQVSEAKKDYISQ 32
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 522 PTDHNISIE-VSHRNYNGSVRSKSPEQKSPKSLSIKSEYLEERKMETDLE 668
P N SI VSHR + SV SKS E ++ S + +R LE
Sbjct: 838 PRSRNNSISNVSHRERSNSVSSKSRETRTSASNESDPKKSTQRDSSKKLE 887
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,232
Number of Sequences: 5004
Number of extensions: 52606
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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