Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26a20
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     31   0.013
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.2  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   8.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
 Frame = +3

Query: 84  PSTENNKREQSTVSQN-LVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKT---IPTSKP 251
           P +   KR++   SQN LVL  +Q+ A  +    Y  +   ++  PT   +    P    
Sbjct: 330 PDSLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYGYPIGSG 389

Query: 252 SSKQTSLQVVTKLSQNTDLILT-QPMITADTE---KYSDIQGSL--QVPTAQAISTSRHS 413
            S  +   + T   Q+   I T +P ++ D     +Y     +L    P+ Q  STS H 
Sbjct: 390 GSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQPSPQYPSTSSHI 449

Query: 414 SKQPSLQ 434
            +QPS++
Sbjct: 450 LQQPSIR 456


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 78  TTPSTENNKREQSTVSQNLVLNSIQSTAADNDET 179
           TT +T NN + Q   +  +   S++S   + DET
Sbjct: 727 TTNNTSNNSQLQIPRASLVSTTSVKSLRLEGDET 760


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 461 KVLHCTTITTTTGQFPSQSN 520
           +V  C  +TTT+G F +  N
Sbjct: 136 QVFDCRYVTTTSGMFEALCN 155


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 514 VQSQLIIIFRLKYLIEIIM 570
           V SQ++I+F L   I I+M
Sbjct: 2   VNSQILILFILSLTITIVM 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,752
Number of Sequences: 438
Number of extensions: 3484
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)