Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26a19
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 66 4e-12
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 29 0.77
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 28 1.0
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 4.1
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 5.4
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 7.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.5
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 66.1 bits (154), Expect = 4e-12
Identities = 34/142 (23%), Positives = 74/142 (52%)
Frame = +2
Query: 212 QLLDELMGRHRNTDPNEKIKKPNWEDPEYCKYYMVKFCPHDLFVNTRADLGACPKVHDEE 391
+++++LMG + + + + ++ D + C+ ++ CPHD+F NT+ DLG CPK+H ++
Sbjct: 7 KIIEQLMGSNLSNFTSRGLV--HFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSDK 64
Query: 392 VKELFEKADPSYKKSQYVEEFLRFCKHMINDVERKIQKGKQRLDLMNSKPEGPPMTQAQT 571
+K +E+A S+ Y E+ + D+ER + +R+D+ ++ E + +
Sbjct: 65 LKSDYERASYSH---DYGYEW-----DYLEDLERHVDDCNKRIDIAEARREKTKEEEERI 116
Query: 572 EKNQEQVSLLSEKITGLVQEAE 637
++ + I ++ E E
Sbjct: 117 DELMRDIIHTDHSIEVIITEME 138
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.77
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +2
Query: 293 EYCKYYMVKFCPHDLFVNTRADLGACPKVHDEEVKELFEKA-DPSYK----KSQYVEEFL 457
EY KY V + + R D G + + + EL EK D Y KS V E +
Sbjct: 14 EY-KYSYVNYDKLKKEIKRRNDQGGWSEEDESDFVELLEKELDKVYSFQKNKSAEVMERI 72
Query: 458 RFCKHMINDVERKI 499
RFC+ ++V R++
Sbjct: 73 RFCEEQTDEVVRRL 86
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 1.0
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 380 HDEEVKELFEKADPSYKKS-QYVEEFLRFCKHMINDVERKIQKGKQRLDLMNSKPEGPPM 556
++E +E FE DP Y+ + L KH I V + K + L+ S P
Sbjct: 33 NEEFFEEEFEIYDPFYRAELPCPKPSLSISKHSIAKVPSNVNKRLELQLLLTSGTFLPNS 92
Query: 557 TQAQTEKNQEQVSLLSEKITG 619
+E+ ++ LLS ITG
Sbjct: 93 RPYLSERVRKHTHLLSNSITG 113
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +2
Query: 389 EVKELFEKADPSYKKSQYVEEFLRFCKHMINDVERKIQKGKQRLDLMNSKPEGPPMTQAQ 568
E++ +E +D Y K Y+ + + + D K Q+ ++ L KP P +A+
Sbjct: 556 ELRTCYELSD-KYNKDIYIGSTVCYSPNEWLDFFSKFQQPREALKFPEDKPRHIPCLEAR 614
Query: 569 TEKNQEQ 589
N+ Q
Sbjct: 615 PSPNRIQ 621
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 388 FIVDFRTSTKISSSINEQIMRTELYHVVFAVLRIFPIRLFNFFVGIGVPVPAHQF 224
F +D T S +NE ++ + L VVFA+L P+ + VG+ P+ +
Sbjct: 57 FALDMFAKTNNSFGVNEVLLASVLGSVVFALLSSQPLCI----VGVTGPITVFNY 107
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 532 VH*IQSLFSFLYFPFYIINHMF 467
VH I S+F+F+YF +N++F
Sbjct: 603 VHFIFSVFTFIYFSLVPLNNLF 624
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 608 FQTATKPVPDSSQSVLESLVGPLVLSS 528
FQT + P D E L+ P VLSS
Sbjct: 36 FQTPSTPSEDEMPQCFEDLIKPQVLSS 62
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 94 QYESKRINFSSHLTSNKKREMFGMERKED 8
QYE +++F ++S K+ ME+ ED
Sbjct: 279 QYEFSQVSFEKEISSQKQISELWMEKCED 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,242
Number of Sequences: 5004
Number of extensions: 45364
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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