Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26a14
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    28   1.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.8  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    27   1.8  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   2.4  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   3.2  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   3.2  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   3.2  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   3.2  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   5.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   7.3  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -2

Query: 273 EMITADNSIMCGILNLNLKTGQFSQIEPPLLLLWIFF---SWHYRSMFVELFDGFIDLDE 103
           E+ ++D   +  +LN  LK        P  L++   F   +++YR M+ +L+D    LD+
Sbjct: 115 ELNSSDAGRVLEVLNKELKIVTSKPSAPSKLVIVANFDLKAFNYRIMYQKLYDSSEVLDD 174

Query: 102 RVE 94
           R+E
Sbjct: 175 RIE 177


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 179  FSGFFSPGTTVLCLLSFLMASSTSMSELNDKTFPDSNCITICW*SAEKYLKCQRLFKVM 3
            F+    PG+T   ++S L+  +  + +L  +T  D N   I    + K+L     FK +
Sbjct: 3455 FANVEKPGSTFTNMVSNLITDARELMKLTPETINDDNLSEIKHLKSRKHLLLTETFKTL 3513


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 91  SFNSLIEVDEAIKKLNKHRTVVPGEKNPEKQKRRLDLRKLARFQVQVQD 237
           ++ +L  VD+  K+ N   T   GEK P K  R+LD   L +FQV   +
Sbjct: 259 TWQTLGTVDQRRKENNISATSWVGEKLPLKSPRKLD--PLGKFQVHCDE 305


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 193 LDLRKLARFQVQVQDSTHYRIVCGYHFLHR 282
           L L  L R   ++ D+ HY+I+ G+ FL+R
Sbjct: 881 LGLAYLHRAMQRLSDNRHYQILQGFTFLYR 910


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 179 FSGFFSPGTTVLCLLSFLMASSTSMSELNDKTFPDSNCI 63
           FS    P   V+CL  FL A + ++ E  ++    S CI
Sbjct: 121 FSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSECI 159


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 179 FSGFFSPGTTVLCLLSFLMASSTSMSELNDKTFPDSNCI 63
           FS    P   V+CL  FL A + ++ E  ++    S CI
Sbjct: 121 FSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSECI 159


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 179 FSGFFSPGTTVLCLLSFLMASSTSMSELNDKTFPDSNCI 63
           FS    P   V+CL  FL A + ++ E  ++    S CI
Sbjct: 93  FSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSECI 131


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 179 FSGFFSPGTTVLCLLSFLMASSTSMSELNDKTFPDSNCI 63
           FS    P   V+CL  FL A + ++ E  ++    S CI
Sbjct: 121 FSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSECI 159


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 76  SGNVLSFNSLIEVDEAIKKLNKH 144
           +GNV+S   ++E ++ I+K+N+H
Sbjct: 109 AGNVISLKLIMEDEKLIEKVNEH 131


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 25  HFKYFSADYQQIVMQLLSGNVLSFNSLIEVDEAIKKLNKHRTVVP 159
           + +Y  A YQ  ++  +    ++  SLI +DE +    K    +P
Sbjct: 349 YLEYLEASYQSDLVAAIKKYKINLRSLIIIDEGVSNTVKDLAFLP 393


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 629 LQRKQFSSGYTRLLLF*KIFLY-KSVININR 540
           +Q+ QF     RLLL  K+FLY +S+ N+ R
Sbjct: 66  IQQNQFLLKALRLLLSKKLFLYDESLANLER 96


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 120  SHQKAQQT*NGSARRKKSREAEEAARFAKTGPFSSSSS 233
            +HQ ++++ +    R  SR +++ +  + TGPF+ S S
Sbjct: 1326 AHQDSRKSLHRHLSRSSSRASKKPSIVSTTGPFNESFS 1363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,373
Number of Sequences: 5004
Number of extensions: 56619
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)