Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26a11
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    28   1.1  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    27   2.5  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   4.4  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +2

Query: 494 KIENWTWDLDLEKEKFLTLEGQDEMIILAERTRKRFPGAVKEKYNNQTILFRYTATQRAQ 673
           KI +W  + DL+ +K L  E    +    E  RKR      +  NN T   R T  +   
Sbjct: 86  KIPDWVLEQDLKIQKDLVKETHARLEQRLEEIRKRNQSRKNQMSNNSTTYHRETKRRNIN 145

Query: 674 QSA 682
             A
Sbjct: 146 AEA 148


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 662 VLPCSETGLSDCYIFL*QLPEIVFVFFLLKLSFHLVPLMLGIFL 531
           V P  +    D Y F   L  I +++F +   F L+ LM+G+FL
Sbjct: 49  VKPRIQKNFQDNYRFYGTLLCICWLYFFIWYPFALLALMVGVFL 92


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 429 NSFNRVFIFVISLALGYLVPCLITIHIFESLQFGYL 322
           N + R F  V S A+ YL+ CL+  H F S++ G L
Sbjct: 336 NLYTRFFKLVQSPAVTYLMACLLESH-FMSIRKGAL 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,644
Number of Sequences: 5004
Number of extensions: 52365
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)