Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26a11
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0463 + 34121421-34121560,34121728-34121812,34122129-341224...    50   1e-06
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964     28   6.0  
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600...    28   8.0  

>03_06_0463 +
           34121421-34121560,34121728-34121812,34122129-34122428,
           34123194-34123352,34123852-34123992,34124078-34124134,
           34124534-34124672,34124954-34125058,34125159-34125376,
           34125980-34126021,34126136-34126309
          Length = 519

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 8/178 (4%)
 Frame = +2

Query: 173 LIITCLTMKLCLFILVSFALYCSSESSNIQNHLGSRTPYRLKGNKND---SQIKYPNCKD 343
           L++  ++  L     +S A    + + +++ HL + T Y +    N    +      C+ 
Sbjct: 10  LVLLLVSAALLAAAPLSPAAETGAAAFDVRRHLSTVTRYDVARGSNSVSSAPSMSDECRV 69

Query: 344 SKIWMVIRHGTRYPNAKDITKINTXXXXXXXXXXXXXXXGKGELSDEQIKKIENWT--WD 517
             + +V RHGTR P  K I +++                 +G  SD  +KKI +W   W+
Sbjct: 70  IHLNLVARHGTRAPTKKRIKELDRLAVRLKALIDEAK---QGPESDS-LKKIPSWMKGWE 125

Query: 518 LDLE---KEKFLTLEGQDEMIILAERTRKRFPGAVKEKYNNQTILFRYTATQRAQQSA 682
              +   K   L  EG++E+  LA R ++RF G   E+Y+      R T   RA  SA
Sbjct: 126 SPWKGRVKGGELVSEGEEELYNLAIRVKERFQGLFDEEYHPDVYSIRATQVPRASASA 183


>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
          Length = 908

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 470 ELSDEQIKKIENWTWDLDLEKEKFLTLEGQDEMIILAERTRKRFPGAVKEKYNNQTI 640
           +LS  Q  K+ N TW   LE  + L +   DEM+ + E          +++Y  QTI
Sbjct: 729 KLSISQCPKLLNITWVRRLELLERLVISNCDEMLTIVEEAN----STEEQQYGTQTI 781


>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
            30560455-30560718,30560803-30560940,30561264-30561315,
            30561525-30561604,30561929-30561988,30562084-30562164,
            30562299-30562376,30563548-30563676,30563896-30564039,
            30564145-30564290,30564402-30564558,30564657-30564715,
            30564800-30564959,30565054-30565203,30565309-30565445,
            30565531-30565677,30565995-30566052,30566417-30566518,
            30566590-30566627,30566846-30566972,30567053-30567223,
            30567313-30567444,30567575-30567681,30567815-30567875,
            30567970-30568147,30568245-30568450,30568781-30568879,
            30569021-30569236,30569333-30569472,30569559-30569660,
            30569747-30569861,30570129-30570194,30570323-30570480,
            30570594-30570690,30570931-30571137,30571435-30571505,
            30571648-30571747,30571836-30571892,30571969-30572025,
            30572108-30572188,30572319-30572401,30572504-30572651
          Length = 1722

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 470  ELSDEQIKKIENWTWDLDLEKEKFLTLE 553
            E  D+  K++E  TW LD+EK   + LE
Sbjct: 1134 EAKDKLEKRVEELTWRLDVEKHLRIDLE 1161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,257,323
Number of Sequences: 37544
Number of extensions: 273599
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)