Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26a10
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    29   0.42 
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    28   1.3  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   6.8  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   9.0  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 396 NSAQTSSPPMQSILT*SLGRAPTIKLVEGRLHW*FSSSPSVHQHC 262
           N A T  P ++ +L       PT  +VEGR  W     P   ++C
Sbjct: 213 NKALTECPTIKKVLVFQRSAEPTASMVEGRDVWWHDIIPKFPRYC 257


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -3

Query: 559 LEGVRVQGVDGVLEHDSLHVLGVNLLQQTRERRQRALAQGEA 434
           L+G  +   D VL  D L  + +++ ++  E+R++ LA+ EA
Sbjct: 336 LDGKNLSQHDQVLREDRLRAIELSVQKEIEEKRRQLLAREEA 377


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 490 SRRGRE--DCRVQERHQPPERGRLQGPG 567
           SR G    D  +++  +PP  G  QGPG
Sbjct: 514 SREGTRSTDATMEDSSRPPSNGSFQGPG 541


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 416 ATTQLPSLSLRECSLPPLSCLLQKVHAEDVKTVVF 520
           A   LP++  RE  LPP +    +++  D+ T VF
Sbjct: 331 AAKDLPNVMYREIELPPFT---SRINWHDISTPVF 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,414
Number of Sequences: 5004
Number of extensions: 40557
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)