Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26a10
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 29 3.0
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 29 4.0
12_02_1235 - 27233480-27233986 28 5.3
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760... 28 5.3
01_01_0381 - 2961422-2963917 28 5.3
04_03_0910 + 20751014-20753437 25 5.9
04_04_0336 + 24500665-24502647 28 7.0
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 27 9.3
08_02_0796 - 21300251-21300373,21300846-21301721 27 9.3
07_01_0056 + 428297-428332,428574-430127,430209-430274 27 9.3
02_05_0113 - 25941189-25941519,25941630-25941925,25942238-259429... 27 9.3
01_01_0490 + 3620523-3623403,3623524-3623996 27 9.3
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 413 PATTQL-PSLSLRECSLPPLSCLLQKV 490
PATT P+ SLR LPPLSC ++V
Sbjct: 18 PATTSSSPAASLRRLLLPPLSCHARQV 44
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 544 RGRLQGPGDHCAHDV 588
RGRL GPGD HDV
Sbjct: 176 RGRLLGPGDRAVHDV 190
>12_02_1235 - 27233480-27233986
Length = 168
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 481 QQTRERRQRALAQGE-ARQLRGRGRVYLGELRADQLAAHAVYIDIVPGPRAHNQVGRGTA 305
++ R R +R ++ E AR+ R R + +L ELRA A A D+V A + R A
Sbjct: 60 EERRRRLRRRISNRESARRSRARKQRHLDELRAKASALRATSRDLV----ARLRGARARA 115
Query: 304 ALV 296
ALV
Sbjct: 116 ALV 118
>01_06_1416 -
37174913-37175006,37175299-37175441,37175932-37176027,
37177125-37177364,37177456-37177812,37178020-37178097,
37178387-37178434,37179406-37179675,37179954-37180054,
37180452-37180605
Length = 526
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 568 PQALEGVRVQGVDGVLEHDSLHVLGVNLLQQTRERRQRALAQG 440
P L + +Q +D + E +LG+ LQQ+ E+ + ALAQG
Sbjct: 331 PSDLLKILIQQLDPLTEQQ---MLGIYSLQQSSEQAEEALAQG 370
>01_01_0381 - 2961422-2963917
Length = 831
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 386 CAEFPEIDTPATTQLPSL--SLRECSLPPLSCLLQKV 490
C + E+D P Q+ + + +C +PPL LLQ++
Sbjct: 772 CIQEDEVDRPTMGQVVQILEGVLDCDMPPLPRLLQRI 808
>04_03_0910 + 20751014-20753437
Length = 807
Score = 24.6 bits (51), Expect(2) = 5.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 CAEFPEIDTPATTQLPSL--SLRECSLPPLSCLLQKVHAEDVKT 511
C + E+D P ++ + L E LPP+ LLQ + KT
Sbjct: 760 CIQENELDRPTMGKVVQILEGLLELDLPPMPRLLQSIVQSSWKT 803
Score = 21.8 bits (44), Expect(2) = 5.9
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +2
Query: 251 ACPEQCWCTDGEELN 295
AC CWC EL+
Sbjct: 753 ACKLACWCIQENELD 767
>04_04_0336 + 24500665-24502647
Length = 660
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 314 STNLIVGARPRDYVNIDCMGGELVCAEFPEIDTPATTQLPSLSLRECSL 460
ST+ IV + R +D +GG+LV + P ++ + + S + EC L
Sbjct: 230 STSSIVSSHVRKICLVDDIGGQLVKSLAPTVNLLMSQAISSDGVSECKL 278
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 484 LQQTRERRQRALAQGEARQLRGRGRVYLGELRADQLAAHAVYI 356
L Q+R RQ A+++ +AR+ R L + R D AAHA+Y+
Sbjct: 3 LCQSRLERQEAVSRCKARR---RYTKQLVQARRDMAAAHALYL 42
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 520 QERHQPPERGRLQGPGDHCAHD 585
Q R Q PE R++GPG H HD
Sbjct: 141 QRREQSPETDRVRGPGHH--HD 160
>07_01_0056 + 428297-428332,428574-430127,430209-430274
Length = 551
Score = 27.5 bits (58), Expect = 9.3
Identities = 23/103 (22%), Positives = 38/103 (36%)
Frame = -1
Query: 402 SGNSAQTSSPPMQSILT*SLGRAPTIKLVEGRLHW*FSSSPSVHQHCSGHADTDANASNN 223
S S+++ SPP + + + K R H S SPS ++ ++
Sbjct: 38 SSTSSRSESPPRKRSKKLKVSDKKSTKNKGRRRHHSLSPSPSPSSSSVSYSTRSSSGGGG 97
Query: 222 NISILKSRPARRGCANDVRNLPGSTW*T*LSILQPRHSTEHNT 94
S P RR + DVR + + R ST ++T
Sbjct: 98 GASERSVSPPRRSRSRDVRKKKKERGRDSKRVRRSRRSTSYST 140
>02_05_0113 -
25941189-25941519,25941630-25941925,25942238-25942942,
25943030-25943131,25943352-25943679,25944170-25944294,
25944388-25944453,25945046-25945109,25945739-25945821,
25945917-25945943
Length = 708
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 487 LLQQTRERRQRALAQGEARQLRGRGRVYLGELRADQLAAHAVYIDIVPGPRAHNQVGRGT 308
L QT++ L A+ + R +LG+ ++ L A A ++D+ RA + GT
Sbjct: 41 LHHQTKQEWSGRLVNS-AKTVESSAREFLGKDKSTTLVASANFVDLAGSERASQALSAGT 99
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 583 HERSDPQALEGVRVQGVDGVLEHDSLHVLGVNLLQQTRERRQRALAQGEARQLRG 419
H + DP + R+QG + L LG+ LL + R + A LRG
Sbjct: 1010 HRKRDPAEVIDSRLQGRSDTQVQEMLQALGIALLCASTRPEDRPTMKDVAALLRG 1064
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,381
Number of Sequences: 37544
Number of extensions: 319117
Number of successful extensions: 993
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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