Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26a05
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.17
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 29 0.69
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 29 0.91
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer... 28 1.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.1
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 27 2.8
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc... 27 3.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 3.7
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 26 6.4
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 6.4
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.4
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 8.5
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 8.5
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 208 IEVHDSNGINNKIKTREITDEINVHNTEACSTETYKQLVDVPTELNE 348
+++H G I T E TD +++ +T L +VPTELNE
Sbjct: 113 LDLHQKEGFEETIVTEEATDAVDLEAKG--TTHGENDLDEVPTELNE 157
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 29.1 bits (62), Expect = 0.69
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 46 SYKMNNKTYYDEQFFLDKYNSNINNCKKRKH 138
S K N + Y FFLD + ++ NC RK+
Sbjct: 279 SIKSNFRQYKLSPFFLDTFTGDVTNCPLRKN 309
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +1
Query: 199 KRVIEVHDSNGINNKIKTREITDEINVHNTEACSTETYKQLVDVPTELNE 348
+ ++ H N + +++ R + VH+ + +T+TY + V V NE
Sbjct: 599 RHILNRHLGNNVGDRVSFRNEKFRVYVHSKISPNTDTYNEYVPVMEAYNE 648
>SPAC56F8.04c
|coq2|ppt1|para-hydroxybenzoate--
polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 358
Score = 28.3 bits (60), Expect = 1.2
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = -3
Query: 717 TSLLSFVRSIKIFKQILALS*LVPT--KSCIVQITYV-RIVIGFTFGYPEVISSRIIPML 547
T+ L + + + L ++ LVP + +ITY ++V+G TFGY V+ P L
Sbjct: 163 TASLGILLQLNPYTIKLGVASLVPVCIYPAMKRITYYPQVVLGLTFGYGAVMG---WPAL 219
Query: 546 TFQFIDVLFPSVFRPLFLTTYHYIFK*TLQSSIPGHCFEDKCLTVVINGRATVCRF 379
+ + SV PL+L+T +I L +I H +DK V N +T RF
Sbjct: 220 AGE--ACMNWSVVAPLYLSTISWI---VLYDTIYAH--QDKRDDVKANIYSTALRF 268
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 601 DDYPDICDLYNTRFSWNQSRQCQNLLEDFY 690
D+Y D D +N +S NQ + +N+L Y
Sbjct: 920 DEYFDYVDPFNIHYSRNQREEAENILRRRY 949
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -2
Query: 109 LNYIYLRKTVHRNRS---YYSFYKKSLKFIEALI 17
LNY+YL K + RN S + S YK+ L ++ ++
Sbjct: 765 LNYVYLMKALFRNISGGKFDSLYKEILPLLQVML 798
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.8
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Frame = +1
Query: 94 DKYNSNINNCKKRKHDHRIFEHNSNCKLIDL-------NTNAKRVIEVHDSNGINNKIKT 252
+K N + KRKHD E + K+ N K E SNG+ +++
Sbjct: 21 EKSNETKDETSKRKHDPAEEESAVSTKVSKSEPLEDKGNAEVKEFKETTKSNGVKPEVEI 80
Query: 253 REITDEINVHNTEAC 297
E T NTE C
Sbjct: 81 TESTKIQKESNTEPC 95
>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 497 KRGRKTLGNNTSMN*NVSMGIILELMTSGYPKVKPMTIRTYVI---CTIHDLVGTNQDNA 667
K G+ LG +++ S L L+ + P ++ + Y + C++H G N D
Sbjct: 33 KSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLG 92
Query: 668 RICLKIF 688
C K+F
Sbjct: 93 TACGKLF 99
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 187 NTNAKRVIEVHDSNGINNK---IKTRE-ITDEINVHNTEACSTETYKQLVDVPTELNEYL 354
NTN + + + D G+NN I RE + ++ +T + +TY Q + E + Y
Sbjct: 35 NTNTAKSVAILDGVGVNNTFGVISYREKFPMDYHIWHTAPSTGKTYLQPWNDAVEPSTYY 94
Query: 355 IDIG 366
ID G
Sbjct: 95 IDEG 98
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 64 KTYYDEQFFLDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNK 243
K +EQ +D + +N K HD+ N K+ ++ KR+ ++ D N + +K
Sbjct: 151 KKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLLDHNDLLSK 210
Query: 244 IK 249
++
Sbjct: 211 LE 212
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 445 RNARLQRLLKNIVVSR--QKERAEDAWKQYINELKCKHGYNSRADDFRVPEGKADDYP 612
R R Q ++ N + + Q++ ++ W++ ++ K K YN+R+++ EG DD P
Sbjct: 34 RRRRSQSMIANKRIHQAFQEDEGDEDWEEEEHKPKAKRRYNTRSNE-SFSEG--DDEP 88
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 259 ITDEINVHNTEACSTETYKQLVDVPTELNEYLIDIGKCAEKSTY 390
+TD++N+ E C Q++ +P+ L+ +L + K E +Y
Sbjct: 347 LTDKMNLTLDELCRIIQNPQIIQIPSTLSFFLEILTKLLEIYSY 390
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +2
Query: 569 LMTSGYPKVKPMTIRTYVICTIHD---LVGTNQDNARICLKIFMDLTKDSRDVLNLK 730
L+ GY VKP + R+Y +H ++ TN I L + DL N K
Sbjct: 519 LIAEGYNLVKPHSHRSYGTPPVHPIDIIIATNMAGMTIVLCVDYDLGNSHHGFRNSK 575
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 319 LVDVPTELNEYLIDI-GKCAEKSTYCRPAIDYYSQAF 426
L VPT + L+ + G ++ PAI+YYS+AF
Sbjct: 832 LATVPTSYDPVLVLLYGHIMARNRSWIPAINYYSRAF 868
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,679
Number of Sequences: 5004
Number of extensions: 59306
Number of successful extensions: 212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -