Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26a05
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97009-5|AAC69036.2| 505|Caenorhabditis elegans Nuclear hormone... 34 0.12
AL031633-16|CAA21028.1| 374|Caenorhabditis elegans Hypothetical... 33 0.28
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 32 0.37
U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68219-3|CAA92480.2| 747|Caenorhabditis elegans Hypothetical pr... 28 6.0
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 28 6.0
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 28 6.0
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 28 6.0
AF022975-3|AAB70674.1| 548|Caenorhabditis elegans Hypothetical ... 28 6.0
U41553-6|AAO91696.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.9
U41553-5|AAO91694.1| 468|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 28 7.9
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 28 7.9
>U97009-5|AAC69036.2| 505|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 220 protein.
Length = 505
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 412 YSQAFVFKTMSRNARLQRLLKNIVVSRQKERAEDAW-KQYINELKCKHGYNSRADDFRVP 588
YS AF K+ Q++++NI + R+K + + W Y ++ K ++ A DF +
Sbjct: 335 YSTAFYRKSNPGAIATQKIIRNICLDREKTKMDTCWMSDYSSQYVKKFMFSLHAKDFDIV 394
Query: 589 EGKADDYPDICDL 627
E ++ P +L
Sbjct: 395 EAISELNPTDVEL 407
>AL031633-16|CAA21028.1| 374|Caenorhabditis elegans Hypothetical
protein Y39A1A.16 protein.
Length = 374
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 67 TYYDEQFFLDKYNSNINNCKKRKHDHRIFEHNSNCKLI 180
T Y F++D ++S INN K++ D IFE+ S+ +L+
Sbjct: 116 TMYSVDFWIDWFHS-INNWNKKQRDQSIFEYRSSKQLL 152
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 32.3 bits (70), Expect = 0.37
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Frame = +1
Query: 52 KMNNKTYYDEQFFLDKYNSNINNCKKRKHDHRIFEHNSNCKLI-----DLNTNAKRVIEV 216
KM +K Y+ + FLD +N ++ K D + EH ++ KL + N +
Sbjct: 119 KMFHK-YHKKMTFLDFSGIKLNISERLKSDVHLVEHGTSKKLAATIHKKITENYVTTVNF 177
Query: 217 HDSNGINNKIKTREITDEINVHNTEACSTETYKQLVDVPTELNEYLIDIGKCAEK 381
S G+ T + + T TY+ L + +L+ I KC +K
Sbjct: 178 GTSFGVELAPCTVRKNVPYELTKIDIVGTSTYQPLETISVLTRSFLLPIDKCYDK 232
>U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical
protein T07F8.1 protein.
Length = 822
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 325 DVPTELNEYLIDIGKCAEKSTYCRPAIDYYSQAFVFKTMSRNARLQRLLKN 477
D+P +NE +++G ++ +C+ ++ A V T + RL +N
Sbjct: 484 DLPDSMNEQRMELGIVQKEEKFCQKVVESLQNALVLTTKIKEVYESRLKQN 534
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 79 EQFFLDKYNSNINNCKKRK-HDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKIKTR 255
EQFF + S N+ + K H+ + ++L + K+ +HD + K+ +
Sbjct: 99 EQFFGENQKSTRNSDQNAKNHEEDPESDDEETAYLNLIRSFKKEESMHDLKNASGKLPSS 158
Query: 256 EITDEINV---HNTEA---CSTE 306
DEI++ H++E+ CS E
Sbjct: 159 NCEDEISIDEFHDSESNGKCSEE 181
>Z68219-3|CAA92480.2| 747|Caenorhabditis elegans Hypothetical
protein T05A1.3 protein.
Length = 747
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 115 NNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKIKTREITDE 270
NN HDH FEH +N L+DL N+ + EV S+ +K + + E
Sbjct: 270 NNKLTYLHDHA-FEHLTNLILLDLKNNSLK--EVKSSSFAGSKFQVKLFLSE 318
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 28.3 bits (60), Expect = 6.0
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Frame = +1
Query: 136 HDHRIFEHNSNCKLIDLNTNAKRV---IEVHDSNGINNKIKTREITDEINVHNTEACSTE 306
H +I E S+ L+DL+TN +V + + D + + + IN T E
Sbjct: 345 HHRKIRELPSDVILVDLDTNCLQVPDDLYIPDLPEPDATHLKERLKNAINKMTTMTVDNE 404
Query: 307 TYKQLVDVPTELNEYLIDIGKCAEKSTYCRPA-IDYYSQAFVFKTMSRNARLQRLLKNIV 483
T D +++ +D+ CR A + +++ A VF S + R RL V
Sbjct: 405 TSVTDADFGIDIDS--VDVA--------CRVAMVQFFNSANVFGNFSEHTRTLRLYPRPV 454
Query: 484 VSRQKE 501
VS Q +
Sbjct: 455 VSLQTD 460
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 28.3 bits (60), Expect = 6.0
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Frame = +1
Query: 136 HDHRIFEHNSNCKLIDLNTNAKRV---IEVHDSNGINNKIKTREITDEINVHNTEACSTE 306
H +I E S+ L+DL+TN +V + + D + + + IN T E
Sbjct: 345 HHRKIRELPSDVILVDLDTNCLQVPDDLYIPDLPEPDATHLKERLKNAINKMTTMTVDNE 404
Query: 307 TYKQLVDVPTELNEYLIDIGKCAEKSTYCRPA-IDYYSQAFVFKTMSRNARLQRLLKNIV 483
T D +++ +D+ CR A + +++ A VF S + R RL V
Sbjct: 405 TSVTDADFGIDIDS--VDVA--------CRVAMVQFFNSANVFGNFSEHTRTLRLYPRPV 454
Query: 484 VSRQKE 501
VS Q +
Sbjct: 455 VSLQTD 460
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 28.3 bits (60), Expect = 6.0
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Frame = +1
Query: 136 HDHRIFEHNSNCKLIDLNTNAKRV---IEVHDSNGINNKIKTREITDEINVHNTEACSTE 306
H +I E S+ L+DL+TN +V + + D + + + IN T E
Sbjct: 345 HHRKIRELPSDVILVDLDTNCLQVPDDLYIPDLPEPDATHLKERLKNAINKMTTMTVDNE 404
Query: 307 TYKQLVDVPTELNEYLIDIGKCAEKSTYCRPA-IDYYSQAFVFKTMSRNARLQRLLKNIV 483
T D +++ +D+ CR A + +++ A VF S + R RL V
Sbjct: 405 TSVTDADFGIDIDS--VDVA--------CRVAMVQFFNSANVFGNFSEHTRTLRLYPRPV 454
Query: 484 VSRQKE 501
VS Q +
Sbjct: 455 VSLQTD 460
>AF022975-3|AAB70674.1| 548|Caenorhabditis elegans Hypothetical
protein K09C6.8 protein.
Length = 548
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = +1
Query: 487 SRQKERAEDAWKQYINELKCKHGYNSRADDFRVPEGKADDYPD---ICDLYNTRFSWNQS 657
+R K E K IN Y SR FR+ G ADDY IC + T S +
Sbjct: 251 ARNKSEREPLPKNVINT------YMSRRQHFRLARGPADDYESWFYICARFITLLSSDLG 304
Query: 658 RQCQNLLEDFYGS 696
QN D Y +
Sbjct: 305 FIVQNTKLDLYSA 317
>U41553-6|AAO91696.1| 297|Caenorhabditis elegans Hypothetical
protein ZK1193.5c protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 91 LDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKIKTR 255
+D+Y +NNC R++ I +HN + KR++ NG+ K++ +
Sbjct: 245 IDQYTQCLNNCAYRENYPHISQHNVKIWFKNRRAKCKRLL-----NGMQEKLEQK 294
>U41553-5|AAO91694.1| 468|Caenorhabditis elegans Hypothetical
protein ZK1193.5a protein.
Length = 468
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 91 LDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKIKTR 255
+D+Y +NNC R++ I +HN + KR++ NG+ K++ +
Sbjct: 416 IDQYTQCLNNCAYRENYPHISQHNVKIWFKNRRAKCKRLL-----NGMQEKLEQK 465
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 658 LIGSN*IVYCTNHICPDSH 602
L+ + +V C NH+CP SH
Sbjct: 1180 LMNNGRVVQCHNHVCPTSH 1198
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 658 LIGSN*IVYCTNHICPDSH 602
L+ + +V C NH+CP SH
Sbjct: 1598 LMNNGRVVQCHNHVCPTSH 1616
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,786,815
Number of Sequences: 27780
Number of extensions: 332880
Number of successful extensions: 1004
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -