Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26a03
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    30   0.36 
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   3.4  
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    25   7.9  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   7.9  
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    25   7.9  

>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 251 PLLFYAILLPTALGRLLFKPDWEPKLNHSIKTRHNPTAHKKLLLNFNGIPLVNVISELQL 430
           PL  Y   L T +    F+    P  +  + T HNP+  + L    N IP +++ +    
Sbjct: 176 PLPVYVRQLLTGIPITPFETFSHPVAHLVVVTSHNPSPFESLRSLINSIPYLSLPA---F 232

Query: 431 VFNDVN 448
           VFND+N
Sbjct: 233 VFNDIN 238


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 300 FLNQIGNRN*TIPLKLDTTRQHIR 371
           FLN IGN N   P+  D++  H+R
Sbjct: 30  FLNAIGNENTITPVYADSSLTHLR 53


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 386 FNGIPLVNVISELQLVFNDVNCQKCTDCMERAVKAFII 499
           F G  +  + S+L+L+F  V+C K       ++++F++
Sbjct: 166 FRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVV 203


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 497 INQHIISSRPNLEDFQNDVLYEKLNINRNKRDANKKVD 610
           ++QHI      L+ F      EKL + R  ++A KK++
Sbjct: 458 LDQHIRLKSQELDAFAQATYREKLYMKRECQNARKKIE 495


>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 257 TTDSLVPFAASSSEGVSTAADNLLTEVC*RASLEQQFYKTRLNSR 123
           T  ++VP   ++ EG+ TA + LL +      LE +F K + +++
Sbjct: 67  TVGTVVPILKTTQEGIQTAMNGLLDQY---KQLEAEFQKFQKDNK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,098
Number of Sequences: 5004
Number of extensions: 46467
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)