Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26a03
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1283 - 35444811-35445146,35445428-35445613,35445700-35445834     29   2.6  
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    29   4.6  

>02_05_1283 - 35444811-35445146,35445428-35445613,35445700-35445834
          Length = 218

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 353 CVEF*WNGSISVPNLV*KANDLK-P*EVKSRRTTTDSLVPFAASSSEGVSTAADNLLTEV 177
           C+ F  +G  + P+ +    DL  P +  S  TTT +L+  A    + ++ +AD+ LTEV
Sbjct: 50  CLAF-HDGDFTFPDDLAPLLDLPDPADSSSSTTTTAALISAAPDPDDAITASADSALTEV 108


>01_01_0762 +
           5889925-5890136,5891110-5891273,5891755-5891878,
           5891941-5892073,5892629-5892732,5892867-5895780,
           5895876-5895965,5896251-5896355,5896633-5896740,
           5896826-5896876
          Length = 1334

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 413 ISELQLVFNDVNCQKCT-DCMERAVKAFIINQHIISSRPNLE 535
           I E  +V  + N +  + DC E    A   +QHIIS +P  E
Sbjct: 607 IKESSIVSQNTNAENVSGDCSEGTACAISYSQHIISDKPTNE 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,708,361
Number of Sequences: 37544
Number of extensions: 253829
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)