Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26a01
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 33 0.031
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 32 0.071
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 29 0.38
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 29 0.50
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 28 1.2
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 2.7
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 3.5
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 26 4.7
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 6.2
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 6.2
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 25 8.2
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 25 8.2
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.1 bits (72), Expect = 0.031
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 286 RPSNPXRQRAKSEF-LPRNKDLRRREGRGRPTEDLQEAXFQR 408
R P Q A++ + LPR +D + E R R T+++QE F R
Sbjct: 27 RSFRPSNQNARANYNLPRVRDAMKEEERSRETKEMQEREFLR 68
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 31.9 bits (69), Expect = 0.071
Identities = 22/104 (21%), Positives = 47/104 (45%)
Frame = +3
Query: 15 EDQKRQAEESAEKTLRYHEKNPEKHPLYPEEWKKFWNKRYKQIQSEGKDPSKHDFKSEWI 194
++ + QA +A + LR + ++ + E ++ +R ++Q G + +
Sbjct: 206 QNNQAQAAAAAAQNLREVREARQRLAMVMEHLRERQEQRNLELQRNGSFEEIERARQRFA 265
Query: 195 VFWTKRMKELHDEELQVRVDEIYRRMRLSPPPVKPXXAESKKRI 326
+ ++E +EE V VDEI+ R +L+ P + A S +
Sbjct: 266 LLGDN-IREPQEEENDVDVDEIFNRQQLNQPALDLNDANSSNSV 308
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.5 bits (63), Expect = 0.38
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 368 VARQKTSKKXISRGETKVARLPTXDPRLQTRLXEGTDDIG 487
+ RQK+S + + + ++RLP DP +T L G ++G
Sbjct: 141 IKRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVG 180
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 29.1 bits (62), Expect = 0.50
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 3 AALAEDQKRQAEESAEKTLRYHEKNPEKHPLYPEEWKKFWNKRYKQIQSEGKDP-SKHDF 179
++LA D+ A++ E + ++ EK + ++ W + KQ+++ G +P S ++
Sbjct: 158 SSLAIDETELAKKFEEASQISNKLEKEKDATGSKSIEELWEEHQKQLKNAGLEPASLEEY 217
Query: 180 KSEW 191
+ +W
Sbjct: 218 QKQW 221
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 278 VAAARQTXXGREQKANFSRETKTSGEEKVEVARQKTSKKXISRGETKVAR 427
+A RQ REQ+A T AR TS + ISRG+T+ R
Sbjct: 393 IAHLRQEEYVREQQARHRDFGFTLSNPAPTSARPATSTRTISRGKTRTLR 442
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 284 AARQTXXGREQKANFSRETKTSGEEKVEVARQKTSKKXISRGETKV-ARLPTXD 442
A RQT KA S E T + + + +QK +KK + E ++ +++P+ D
Sbjct: 794 ARRQTALEESLKAPISIEDATDPQTILAILKQKKAKKKHAAREMEISSQIPSND 847
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 3 AALAEDQKRQAEESAEKTLRYHEKNPEKH 89
A + EDQ R +E EK L +++ +KH
Sbjct: 871 AEVIEDQSRNSEAENEKGLSTEQRDEKKH 899
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/58 (20%), Positives = 31/58 (53%)
Frame = +3
Query: 15 EDQKRQAEESAEKTLRYHEKNPEKHPLYPEEWKKFWNKRYKQIQSEGKDPSKHDFKSE 188
E+Q+R+ +E + ++ + ++ Y ++ + W+K+ +I+ E HD+K +
Sbjct: 540 EEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENERWDKKIAEIELE----QFHDYKPQ 593
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 75 NPEKHPLYPEEWKKFWNKRYKQIQSEGKDPSKHDFKSEWIVFWTKRMKEL 224
+P L P+E + F+NK + + DP + +S V W ++++L
Sbjct: 383 DPTLAGLSPDEVENFYNKSKNSLANPDYDPKIYGLQS---VLWYSKLRKL 429
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 3 AALAEDQKRQAEESAEKTLRYHEKNPEKHPLYPEEWKKFWNKRYKQIQS 149
A AE +K + +++A K P KHPL F + YK++ S
Sbjct: 225 AKKAEKKKDEKKKNAPKPQAEAPAKPPKHPLASAPNGSFDIEEYKRVYS 273
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 168 WTDLFPRSVSVCSV 127
W DLF +++S CSV
Sbjct: 280 WNDLFSKNISACSV 293
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 24 KRQAEESAEKTLRYHEKNPEKHPLYPEEWKKFWNKRYKQIQSEGKDPSK 170
KRQ +E+ E +R H+K E+ ++ + + + GKDP+K
Sbjct: 165 KRQKQEAREAAIREHQKEKERR-------EQVEQQIIFDLATSGKDPNK 206
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Frame = +3
Query: 6 ALAEDQKRQAEESAEKTL----RYHEKNPEK-HPLY-----PEEWKKFWNKRYKQIQSE 152
++ +D+KR + S +++L RYH+ P+K H Y ++ K+F N++ Q + E
Sbjct: 257 SMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENRQRLQKEKE 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,000
Number of Sequences: 5004
Number of extensions: 27307
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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