Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p23
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    27   1.3  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   5.1  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    24   9.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    24   9.0  

>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 127 CRYLRLFALEKMGESFMPSNFY---YAIYLYSLE 35
           C +    AL    +SF PSNF+   YA++ +SL+
Sbjct: 93  CHFAWSCALPCFVDSFFPSNFFLRTYALFTFSLQ 126


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 272 YCNNVLKQNISV 307
           YCNNV++ N+SV
Sbjct: 657 YCNNVIQDNLSV 668


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 362 FSDLWN*EHKFDIHIILLSLI 300
           FSD+W  +  F+ H+ ++  I
Sbjct: 253 FSDIWKDKDSFEAHVFMIKKI 273


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 112 LFALEKMGESFMPSNFYYAIY 50
           +FA+EK+   F  +NF+ A Y
Sbjct: 600 VFAIEKLVNFFSMANFFLAFY 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,305
Number of Sequences: 5004
Number of extensions: 20566
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)