Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p23
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0150 - 1179147-1179899,1180025-1180579                           30   0.68 
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824...    27   4.8  

>08_01_0150 - 1179147-1179899,1180025-1180579
          Length = 435

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 90  PIFSSAKSRRYLQALLDTAFHHHCCPCCSAVTQPPG 197
           P +   +   YLQA+ D     HC PC  +   PPG
Sbjct: 373 PTYPLRRKELYLQAV-DEILADHCLPCRCSAPSPPG 407


>06_03_0992 -
           26680555-26680840,26680893-26681279,26681364-26682441,
           26682537-26683083
          Length = 765

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 203 MIRTHLVSFKTKTEGYFRKTNLFYCNNVL 289
           M  T  + F      YFRK  +F CNN L
Sbjct: 178 MFYTAGIPFNVARNPYFRKAFMFACNNAL 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,770,794
Number of Sequences: 37544
Number of extensions: 119921
Number of successful extensions: 278
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)