Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p20
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   2.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   2.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   3.8  
AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly pro...    22   3.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.8  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 411 YNSNSEFYVKIFYMIN 458
           YN+N+ +  K++Y IN
Sbjct: 96  YNNNNNYNKKLYYNIN 111


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 411 YNSNSEFYVKIFYMIN 458
           YN+N+ +  K++Y IN
Sbjct: 334 YNNNNNYNKKLYYNIN 349


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 325 FPRFPTVPXPGDSTEQLVKPLLDKSQTTNTTR 420
           FPR  ++P P   T   V+ LL ++Q     R
Sbjct: 150 FPRGGSLPTPVTPTPTTVQQLLRRAQIRRNER 181


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 404 LLIQLELGILCQNI 445
           LL+ + LGI CQNI
Sbjct: 5   LLLMVCLGIACQNI 18


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 340 TVPXPGDSTEQLVKPLLDKSQTTNTT 417
           T+P P D      +P   KSQ + TT
Sbjct: 27  TMPMPDDMRTVTKRPKTKKSQGSRTT 52


>AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly
           protein MRJP4 protein.
          Length = 27

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 404 LLIQLELGILCQNI 445
           LL+ + LGI CQNI
Sbjct: 5   LLLMVCLGIACQNI 18


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 197 Q*S*IYVAVPRXXDTYLSQLSDVPREI 277
           Q S ++VA+PR  D     L  V RE+
Sbjct: 69  QQSTVFVAIPRIQDGVPLTLGYVTREV 95


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 105 QDEIETFYEASQRXRDYYRGLR 170
           ++ I  FY  S R  D   GLR
Sbjct: 463 ENRISNFYNGSFRNLDQLTGLR 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,260
Number of Sequences: 438
Number of extensions: 2375
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)