Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p19
         (635 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X01715-1|CAA25861.1|  520|Homo sapiens acetylcholine receptor ga...    30   7.9  
BC111802-1|AAI11803.1|  465|Homo sapiens CHRNG protein protein.        30   7.9  
AC092165-3|AAY24103.1|  520|Homo sapiens unknown protein.              30   7.9  

>X01715-1|CAA25861.1|  520|Homo sapiens acetylcholine receptor gamma
           chain precursor protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 376 LVPSSIRSHPRPLIPNSLYSTGSSIPLDNSPWS 278
           L+P  +R H RPL P ++  T S +   +S WS
Sbjct: 353 LLPQLLRMHVRPLAPAAVQDTQSRLQNGSSGWS 385


>BC111802-1|AAI11803.1|  465|Homo sapiens CHRNG protein protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 376 LVPSSIRSHPRPLIPNSLYSTGSSIPLDNSPWS 278
           L+P  +R H RPL P ++  T S +   +S WS
Sbjct: 298 LLPQLLRMHVRPLAPAAVQDTQSRLQNGSSGWS 330


>AC092165-3|AAY24103.1|  520|Homo sapiens unknown protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 376 LVPSSIRSHPRPLIPNSLYSTGSSIPLDNSPWS 278
           L+P  +R H RPL P ++  T S +   +S WS
Sbjct: 353 LLPQLLRMHVRPLAPAAVQDTQSRLQNGSSGWS 385


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,109,767
Number of Sequences: 237096
Number of extensions: 820786
Number of successful extensions: 1488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)