Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p16
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0432 - 15861997-15862096,15862449-15862519,15862612-158627...    31   0.67 
06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670           31   0.89 
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    29   2.7  
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337...    29   3.6  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    29   3.6  
10_08_0029 + 14270945-14271364,14271449-14272486                       28   8.3  
02_04_0036 + 19097693-19098106                                         28   8.3  

>04_03_0432 -
           15861997-15862096,15862449-15862519,15862612-15862774,
           15865311-15865535,15866156-15866403,15866489-15866618,
           15866716-15866975
          Length = 398

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 666 LPNIPHLRASIVGSTSVGGNCLKGPPHIKDSNRGSSTAI 550
           +PN+PH   ++  S  VGG  LK P H+ D+     T I
Sbjct: 285 VPNMPHYNVNLK-SIDVGGTALKLPSHMFDTGEKKGTII 322


>06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670
          Length = 179

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 365 FYFYTMQAACENCTRTNRLRSTSKNCKQTSCDFNQ 469
           F FY  Q +          RST KNCK  +C FN+
Sbjct: 112 FIFYVFQNSSSTTYLVAVARSTQKNCKLQACRFNK 146


>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 291 FCVDRIKYADWPPI 332
           FC++  KYADWPP+
Sbjct: 313 FCINDNKYADWPPL 326


>11_01_0442 -
           3369827-3370168,3370608-3372616,3372953-3373277,
           3373386-3373415
          Length = 901

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 612 GNCLKGPPHIKDSNRGSSTAILLPAMKSIGSY 517
           G+CL   P ++ S+  S T++    + S+GSY
Sbjct: 864 GSCLSPIPRVQSSSTHSQTSVFSGGLSSLGSY 895


>04_04_0585 -
           26386248-26386271,26386510-26386699,26387363-26387463,
           26387554-26387685,26387759-26387857,26387956-26388127,
           26388217-26388512,26388601-26388726,26388848-26389062,
           26389154-26389225,26389299-26389368,26389441-26389517,
           26389605-26389923,26390034-26390225,26390321-26390551,
           26390585-26390950,26392251-26392313,26392394-26392456,
           26392544-26392642,26393497-26393523,26394299-26394358,
           26395230-26396147,26396243-26397268
          Length = 1645

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 430 SRSQSICSSTVFTGCLHRIEIECRLKSQLKAFSIGGQSAYL 308
           SRSQS C S + TG + R++     K+ ++  S GG+  ++
Sbjct: 663 SRSQSTCRSDLLTGKMPRVQTSRLGKNPIEVDSDGGEDFHV 703


>10_08_0029 + 14270945-14271364,14271449-14272486
          Length = 485

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 585 IKDSNRGSSTAILLPAMKSIGSYWTRVGISLRRDY 481
           +KDS  GS+T+ +L A  ++G   + VG+ L R +
Sbjct: 450 LKDSECGSTTSSVLTAATTVGYCRSLVGLDLHRGH 484


>02_04_0036 + 19097693-19098106
          Length = 137

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 232 SLQHLA*HCWNIRLLFGSTP 173
           + Q L  HCW + LLFG  P
Sbjct: 111 TFQQLGLHCWTLHLLFGFGP 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,881
Number of Sequences: 37544
Number of extensions: 377869
Number of successful extensions: 1012
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)