Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25p14
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 28 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 2.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.5
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 2.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 3.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 3.3
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.6
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 7.6
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 7.6
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -3
Query: 674 MLTAYVVASTAFAI--SLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLL 501
++ + V A+ +F + + V+WA+ T L++++S+ T +SV +A GLLL
Sbjct: 70 IILSIVSAALSFYLDTNAVWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -3
Query: 668 TAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLLSS 495
TA +S++ IS + S PTSTS T+ S +S SS + +S S++ SS
Sbjct: 262 TASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS 319
Score = 25.8 bits (54), Expect = 5.8
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = -3
Query: 650 STAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGL----LLSSGCFC 483
ST+ IS + S PTSTS T+ S +S SS + + S+ S++ SS
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344
Query: 482 FSGKVIFNTSFS*TQLPSEFTS 417
S ++SFS T S+ +S
Sbjct: 345 SSSSSPSSSSFSSTTSSSKSSS 366
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +1
Query: 421 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV--R 591
VNS G+ E + F ++ ++ E+ K + P + S+EE E R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPNPFYN---SKEESEPLAAHGYIYR 379
Query: 592 DVDVGLETAQKTNEIAKAVEATTYAVN 672
DVD+ LET +K ++ E Y N
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKN 406
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 83 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 178
P H+TT R I +I I PS+LT G +C HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 157 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 336
E + + +W+++ +MQ D ++L F I N G++ Q +I L G + ++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162
Query: 337 VKAKN 351
K N
Sbjct: 163 SKKLN 167
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 121 YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 276
+ Y F +E +T S + NL E+++L NM+ EL KFP + GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 478 LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 600
+K ++PE + +PV + ST + +E E T +++V +
Sbjct: 908 IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 70 AAVSAAPQYYHGSSHWPYHHYDPFSP 147
A +A PQYY +P HY P P
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQP 527
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 204 NATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSPAWLRTERHQRESEKWSAD 362
+ TL + ++ VP RT +R SD + W+ + R Q+ E+W D
Sbjct: 583 DGTLIESARNSIDAVPTDRLLRTL-KRLASDSRNIVWILSGRSQKFMEEWMGD 634
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 472 FPLKQKQPEDSKRPVAEPTETTSTNVSRE 558
F K + K P EPTE +N+S E
Sbjct: 885 FSFKAFGIDSKKSPTPEPTEMAESNISEE 913
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,786
Number of Sequences: 5004
Number of extensions: 58084
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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