Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p14
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       30   1.5  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             30   2.0  
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)            30   2.0  
SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   28   6.0  
SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)                28   6.0  
SB_46782| Best HMM Match : DUF1610 (HMM E-Value=0.97)                  28   8.0  
SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)                28   8.0  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 451 KDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTE 579
           K   K   P ++++ E+ +RP  +PT+   T + R   E  T+
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTK 469



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 448 EKDVLKITFPL-KQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETAQK 624
           E+   K T PL  + +PE+ +R    PT+   T + R   E  T+   + +   +E+A++
Sbjct: 343 ERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTIKRRPTERPTKKPTKPLLPEVESAEE 402


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 478 LKQKQPEDSKRPVAEPTETTSTNVSRE 558
           ++Q Q + SKRP   P ETTS N+ ++
Sbjct: 182 IEQSQADRSKRPYDPPVETTSNNMRKK 208


>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
          Length = 347

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 478 LKQKQPEDSKRPVAEPTETTSTNVSRE 558
           ++Q Q + SKRP   P ETTS N+ ++
Sbjct: 170 IEQSQADRSKRPYDPPVETTSNNMRKK 196


>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 418 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTE 531
           DVN +G  VY KD L+  F L  K  +DSK  RP  +PT+
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTK 149


>SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)
          Length = 552

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 418 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTETTSTNVSREEMEFTTESNVR 591
           DV+ +G  VY KD L+  F L  K  +DSK  RP  +PT+  S+   R +      + +R
Sbjct: 423 DVDGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTKVPSSPGVRSDELIDVMATIR 480


>SB_46782| Best HMM Match : DUF1610 (HMM E-Value=0.97)
          Length = 451

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +1

Query: 451 KDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETAQKTN 630
           K V+K T P   ++  + ++    PT++ S    R  +  +++S   D +   E++QK++
Sbjct: 245 KAVIKRTIPSSDEEDSEKEKTPVTPTKSKSPTKIRRLLSSSSDS-ASDEESCQESSQKSD 303

Query: 631 EI 636
           E+
Sbjct: 304 EL 305


>SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)
          Length = 315

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 283 DKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNH-YLKIQNLPW 417
           D Y++  +    EQ+D N   K G   VQ    FN+ Y  I+ L W
Sbjct: 22  DDYEVDENSDDEEQEDPNDYCKGGYHPVQLGDLFNNRYSVIRKLGW 67


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 151  VRESMLDTHSLWSNLANEMQHLDNMMKELSL 243
            + ES L+TH +  NLA E+  LDN   E++L
Sbjct: 4396 IAESQLETHDVL-NLAYEITELDNSPPEIAL 4425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,774,825
Number of Sequences: 59808
Number of extensions: 453632
Number of successful extensions: 1517
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)