Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p13
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    29   0.30 
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    29   0.52 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   2.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   6.4  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   8.4  

>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 154 FCERQYCFFSSACSGNPTPESCFNCED 74
           FC ++ C+F  AC+G  TP +  N ++
Sbjct: 511 FCPKENCYFMFACAGIRTPRTARNDQE 537


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 365  YNNMAAIEFETISRYISTSAFEIQRIRRMTHSVIIHNYLM 246
            Y + AAI +E +SRYIST+    + I +   + II +YL+
Sbjct: 1033 YRDAAAIIYEKLSRYISTT----ELIGKKERTFIIEHYLI 1068


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 207 KLDCHGLKKSTDLHKIIVDDNRM 275
           KL+  G+KK T LHK +++  ++
Sbjct: 289 KLENRGVKKKTSLHKSVIEGEKI 311


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = -3

Query: 247 CKSVLFFNPWQSNFMAAMASYKFIIIEAIVKFCERQYCFFSSACS--GNPTP 98
           C+  L    W S  +A        +   ++KFC   Y  F S C+  G  TP
Sbjct: 488 CQYGLISENWTSFLVAYSTFVSSALAVELLKFCLNSYVNFVSVCTLFGLETP 539


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 169 EAIVKFCERQYCFFSSAC 116
           + I++FCE+ Y FF   C
Sbjct: 150 KVIIRFCEQGYSFFYYLC 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,338
Number of Sequences: 5004
Number of extensions: 42785
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)