Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p13
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0380 + 18335903-18337837                                         29   2.1  
04_03_0737 - 19152942-19154930                                         28   3.7  
09_02_0330 + 7321031-7321231,7321313-7321434,7321461-7322135,732...    27   6.4  
04_03_0739 + 19180048-19182039                                         27   6.4  

>02_03_0380 + 18335903-18337837
          Length = 644

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 356 MAAIEFETISRYISTSAFEIQRIRRMTHSVIIHNYLM 246
           M AI  +   R I T AF+   I  +T S+  HNYL+
Sbjct: 163 MVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLV 199


>04_03_0737 - 19152942-19154930
          Length = 662

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 356 MAAIEFETISRYISTSAFEIQRIRRMTHSVIIHNYLM 246
           + AI  +   R I T AF+   I  +T S+  HNYL+
Sbjct: 181 LVAITGQVPRRMIGTDAFQETPIVELTRSITKHNYLV 217


>09_02_0330 +
           7321031-7321231,7321313-7321434,7321461-7322135,
           7322218-7322287,7322469-7322768
          Length = 455

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 4   DPRAFNKKHCTFLFIHPKIITIRYLHN*SKTQEWD 108
           DP   N++H   L I PK  ++ YL N +K++++D
Sbjct: 350 DPSMVNERHWILLVIVPKWSSVTYL-NSNKSKDYD 383


>04_03_0739 + 19180048-19182039
          Length = 663

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 356 MAAIEFETISRYISTSAFEIQRIRRMTHSVIIHNYLM 246
           + AI  +   R I T AF+   I   T S+  HNYL+
Sbjct: 177 LVAITGQAPRRMIGTDAFQETPIVEFTRSITKHNYLI 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,236,468
Number of Sequences: 37544
Number of extensions: 231289
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)