Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p13
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 408 LNTGSKRSFKITIDIQQYGGDRIRNNFPVY-FNIRVRNSTNQAHDSF 271
           LNT +  SF   I   Q     I NN+PV+ F        N  +D +
Sbjct: 564 LNTAATLSFCEMIHNAQVNKRSIHNNYPVHTFGRLTSKHDNSLYDEY 610


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 133 FFSSACSGNPTPE 95
           F     SGNPTPE
Sbjct: 412 FLKCVASGNPTPE 424


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 177 INLYDAIAAMKLDCHGLKKSTDLHK 251
           +NL + I   K++   L +S DLH+
Sbjct: 37  LNLMEQILLAKIEKQNLHESDDLHE 61


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 224 SMAIQFHGGYGVIQIY 177
           S  +Q H GY +IQ+Y
Sbjct: 237 SFNLQRHTGYFLIQVY 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,372
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)