Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p08
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0133 + 41335752-41336021,41336123-41336290                       30   2.0  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    29   2.6  
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409...    28   8.0  
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083...    28   8.0  

>01_07_0133 + 41335752-41336021,41336123-41336290
          Length = 145

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 255 ARILNDLEEHQIQVYQFPECDSDEDEDFKQQ---DRELKEAAPFAVVASDIVLEMGGKRV 425
           AR+ +DL+E  ++  +  +   +E+EDF+Q    + E ++A   A V  + VL     R 
Sbjct: 77  ARVADDLDERFLREMESNKAIMEENEDFEQDGGGEEEEEDAEQPAPVEKEGVLVAAAPRT 136

Query: 426 RGR 434
           R R
Sbjct: 137 RNR 139


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 529 RSCMCVEINIVLSLVK--SECRGFSTSTIPHGYCLPRT-LLPPISRTISEAT 383
           +SC    ++   S  K  S C+ FS    PH + LP   + PP++RT+S+ T
Sbjct: 54  KSCRSTTVSRPTSPSKEVSRCQSFSADR-PHAHPLPIPGVRPPVTRTVSDIT 104


>02_02_0625 -
           12339623-12339707,12339938-12340062,12340844-12340996,
           12342037-12342102,12343374-12343443,12343523-12343593,
           12343664-12343795,12344042-12344130,12344189-12344270,
           12344743-12344811,12345641-12345730,12345856-12345918,
           12346158-12346217
          Length = 384

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 192 NIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSDEDED 335
           N++ + + A +  AI +K++ + ++  L  +  QV    ECDS +D D
Sbjct: 283 NVLTLFSTAATTKAI-VKKMSSEVVQLLLANAYQVCLHLECDSSKDSD 329


>01_06_1580 -
           38406740-38407257,38407481-38407552,38408309-38408365,
           38408476-38408532,38408643-38408699,38408809-38408865,
           38409371-38409424,38409744-38409800,38410023-38410076,
           38412208-38412220,38413530-38413580,38414134-38414193,
           38414640-38414761,38415033-38415894,38416468-38416667,
           38417159-38417238,38417525-38417619
          Length = 821

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 309 ECDSDEDEDFKQQDRELKEAAPFAVVASDIVL 404
           + DSDEDED   +  E + AAP A  A D+V+
Sbjct: 679 DSDSDEDEDPHPEQHEPERAAPRA--AMDVVM 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,213
Number of Sequences: 37544
Number of extensions: 339897
Number of successful extensions: 1019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)