Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25p08
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 147 6e-36
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 126 1e-29
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 126 1e-29
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 126 1e-29
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 31 1.0
U97193-13|AAO38676.1| 215|Caenorhabditis elegans Hypothetical p... 29 4.1
U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical p... 29 4.1
Z81496-6|CAB04070.2| 313|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF003740-1|AAM15561.2| 488|Caenorhabditis elegans Hypothetical ... 28 7.2
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 27 9.5
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 27 9.5
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 147 bits (357), Expect = 6e-36
Identities = 68/142 (47%), Positives = 103/142 (72%)
Frame = +3
Query: 144 LRQVDLEMMKRLHRKVNIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSD 323
L+ +D+E+MK LH +VNIV VI+KAD LT E+ R K +I+ D E +I++Y+FPE +
Sbjct: 172 LKPIDIELMKHLHGRVNIVPVISKADCLTRDELLRFKKQIVKDAETAEIKLYKFPELEDP 231
Query: 324 EDEDFKQQDRELKEAAPFAVVASDIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTM 503
+ K +L++A PFA++ S+++ E GK++R R+YPWG V+VEN +H+DF LR M
Sbjct: 232 YTD--KVAIEKLRKALPFAIIGSNMLKEKDGKKIRYREYPWGTVEVENMQHNDFLTLRDM 289
Query: 504 LISTHMQDLKDVTQDVHYENFR 569
+I T++ D+ DVT++VHYENFR
Sbjct: 290 IIRTNLIDMIDVTRNVHYENFR 311
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 126 bits (304), Expect = 1e-29
Identities = 61/150 (40%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Frame = +3
Query: 144 LRQVDLEMMKRLHRKVNIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSD 323
L+ +DL ++ L ++VN++ VIAK+D+ E+ R KA+IL++L+ +I +Y FP
Sbjct: 219 LKALDLVTLRELAKRVNVIPVIAKSDTTCKDELLRFKAKILSELKSQKIDIYTFPT---- 274
Query: 324 EDEDFKQQDRELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRT 500
+DE ++E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR
Sbjct: 275 DDETVSTTNKEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLRE 334
Query: 501 MLISTHMQDLKDVTQDVHYENFRAQCISQI 590
L+ T++ +++ T + YEN+R + Q+
Sbjct: 335 ALLRTNVDEMRQRTHESLYENYRRDRLRQM 364
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 126 bits (304), Expect = 1e-29
Identities = 61/150 (40%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Frame = +3
Query: 144 LRQVDLEMMKRLHRKVNIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSD 323
L+ +DL ++ L ++VN++ VIAK+D+ E+ R KA+IL++L+ +I +Y FP
Sbjct: 219 LKALDLVTLRELAKRVNVIPVIAKSDTTCKDELLRFKAKILSELKSQKIDIYTFPT---- 274
Query: 324 EDEDFKQQDRELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRT 500
+DE ++E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR
Sbjct: 275 DDETVSTTNKEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLRE 334
Query: 501 MLISTHMQDLKDVTQDVHYENFRAQCISQI 590
L+ T++ +++ T + YEN+R + Q+
Sbjct: 335 ALLRTNVDEMRQRTHESLYENYRRDRLRQM 364
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 126 bits (304), Expect = 1e-29
Identities = 61/150 (40%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Frame = +3
Query: 144 LRQVDLEMMKRLHRKVNIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSD 323
L+ +DL ++ L ++VN++ VIAK+D+ E+ R KA+IL++L+ +I +Y FP
Sbjct: 288 LKALDLVTLRELAKRVNVIPVIAKSDTTCKDELLRFKAKILSELKSQKIDIYTFPT---- 343
Query: 324 EDEDFKQQDRELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRT 500
+DE ++E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR
Sbjct: 344 DDETVSTTNKEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLRE 403
Query: 501 MLISTHMQDLKDVTQDVHYENFRAQCISQI 590
L+ T++ +++ T + YEN+R + Q+
Sbjct: 404 ALLRTNVDEMRQRTHESLYENYRRDRLRQM 433
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +3
Query: 192 NIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSDEDEDFKQQDRELKEAA 371
N+ ++ +KAD L I R A D +E + D +++ED +++D E +E
Sbjct: 452 NVPLIKSKADLLKQIAANRAAASAAQDSDEDE---------DEEDEEDVEEEDEEEEEEE 502
Query: 372 PFAVVASDIVLEMGG 416
V + + GG
Sbjct: 503 DIPAVKPKVTEKQGG 517
>U97193-13|AAO38676.1| 215|Caenorhabditis elegans Hypothetical
protein C06A5.8b protein.
Length = 215
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 297 YQFPECDSDEDEDFKQQDRELKEAAPFAVVASDIVLEMGGKRVRGRQ 437
Y E D DE+E+ ++D E +E P A S E VRG Q
Sbjct: 126 YDEEESDEDEEENEDEEDVEEEEEKPCAEKKSPAQPERSSSLVRGFQ 172
>U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical
protein C06A5.8a protein.
Length = 283
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 297 YQFPECDSDEDEDFKQQDRELKEAAPFAVVASDIVLEMGGKRVRGRQ 437
Y E D DE+E+ ++D E +E P A S E VRG Q
Sbjct: 194 YDEEESDEDEEENEDEEDVEEEEEKPCAEKKSPAQPERSSSLVRGFQ 240
>Z81496-6|CAB04070.2| 313|Caenorhabditis elegans Hypothetical
protein F09C6.2 protein.
Length = 313
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 525 DLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVV 659
D K+V+ H+ENF + ++ +Q A++ R L R S + +V
Sbjct: 194 DSKEVSHMFHFENFNIKMLNFDTQAAVKMRDDLMRRSTFKSCSIV 238
>AF003740-1|AAM15561.2| 488|Caenorhabditis elegans Hypothetical
protein C41D11.3 protein.
Length = 488
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 308 RELVYLYLVFFKIVKYSCLESFYFDRRKRVRFCDYHHDVHFAMQTLHHFEIHLS 147
RE +++ + K +++S L YFDRR+ D+ M HH + S
Sbjct: 165 REEIFIPGIRRKKIRFSGLHVHYFDRRQGGSTVPTEGDISLDMHNKHHSHRYFS 218
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 270 DLEEHQIQVYQFPECDSDEDEDFKQQDRELKEA 368
D E + +V + E +++E+ED +QQ+ E EA
Sbjct: 11 DEEVEEEEVEEVEEAEAEEEEDTEQQEEESGEA 43
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 270 DLEEHQIQVYQFPECDSDEDEDFKQQDRELKEA 368
D E + +V + E +++E+ED +QQ+ E EA
Sbjct: 11 DEEVEEEEVEEVEEAEAEEEEDTEQQEEESGEA 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,234
Number of Sequences: 27780
Number of extensions: 314341
Number of successful extensions: 1049
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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