Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p05
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    36   3e-04
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    34   0.001
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.0  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = +2

Query: 386 VLAQRRDTGEKVAIKRMKRKYYSWDEAMNLREV-KSLKKLNHAN--IVKLREVIRENDTL 556
           +LA+R+ T E  AIK +K+     D+ +    V K +  L+     +V+L    +  D L
Sbjct: 1   MLAERKGTDELYAIKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLHSCFQTMDRL 60

Query: 557 YFVFEYMR-GNLYQLIRDADRAFPEPV 634
           YFV EY+  G+L   I+   + F EPV
Sbjct: 61  YFVMEYVNGGDLMYQIQQCGK-FKEPV 86


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +2

Query: 356 QLGDGTYGSVVLAQRRDTGEKVAIKRMKRKYYSWDEAMN--LREVKSLKKLNHANIVKLR 529
           + GD   G + L     T   VAIK +K    S D+A N  L E   + +  H N++ L+
Sbjct: 643 EFGDVCRGKLKLPPDGRTEIDVAIKTLKPG--SADKARNDFLTEASIMGQFEHPNVIFLQ 700

Query: 530 EVIRENDTLYFVFEYM-RGNLYQLIRDADRAF 622
            V+ +++ +  + E+M  G+L   +R  D  F
Sbjct: 701 GVVTKSNPVMIITEFMENGSLDTFLRANDGKF 732


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 104 HHFQNTFKLIQTTYVK 57
           +H QN FK+I++T  K
Sbjct: 57  NHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 104 HHFQNTFKLIQTTYVK 57
           +H QN FK+I++T  K
Sbjct: 40  NHIQNIFKIIKSTNEK 55


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -1

Query: 237 DLN*SETLNKHLVAYFQYPLINNVTNLCLRRNYLEIVKDYLSLQAS 100
           D+N  ET+ + L  Y+Q  ++  V    L   ++++ KD + +  +
Sbjct: 508 DMN-YETMGRALRYYYQRGILAKVDGQRLVYQFVDVPKDIIEIDCT 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,322
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)