Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p04
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.9  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 282 NPKFNFLNSGDPYHAYYQHKVREIKEGKVPEP 377
           N K+N+ N+      YY++ +  I++  VP P
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYIINIEQIPVPVP 132


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 281 QSKVQLP*FRGSLPCLLSA*SQRDQRGKSSRTNC 382
           Q++V +P +R  L CL    S R +R + +  NC
Sbjct: 418 QTEVWIPKWRQFLYCLAGDESFRKRRQREAAGNC 451


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 266 SDPSFKFRTITSHKAGSFINNISDFRWW 183
           +DP  K R IT  +    +NNI   RWW
Sbjct: 21  NDPFLK-RPITGDEKW-VVNNIKRKRWW 46


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 98   YRWHCAFRLQLLSQKSRRYLRTMNNNLQQQP 6
            Y++HC  + +   +  +R  +  N +L Q+P
Sbjct: 1725 YKFHCMEKNEAAMKLKKRIEKGANPDLSQKP 1755


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 16/66 (24%), Positives = 24/66 (36%)
 Frame = +2

Query: 416 GSRSSHSGPPAGAPQGSCSCRTASAARPTTRFRIYR*STVYIGSGARHSEINRAICRQKR 595
           G  S H+G   G+P+   S    S  R   +  +   ST  + +     E   + C Q  
Sbjct: 310 GRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTPSKCSQTS 369

Query: 596 SSVLNG 613
               NG
Sbjct: 370 VHYSNG 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,573
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)