Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25p03
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen prot...    31   0.67 
U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protei...    30   1.2  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin prot...    28   4.7  
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen protein
           49 protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 413 RGQPGELFPDKPWKGQQNEPNP-AVVGMSGIQQTPVG--GEPQGQASPGIFNSRGA 571
           +G PG      P +GQ  +P   A+VG++G +  P G  GEP  Q  PG+    GA
Sbjct: 185 QGPPGSAGRAGP-RGQAGQPGTIAIVGLAG-RPGPQGPLGEPGAQGEPGVDGKDGA 238


>U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protein
           114 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/57 (35%), Positives = 23/57 (40%)
 Frame = +2

Query: 416 GQPGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSD 586
           G PGE   D P +G     +P   G SGI   P    P G A P      G A G +
Sbjct: 220 GMPGEPGKDAPQEGSPVPGDPGPPGDSGIPGPP---GPPGMAGPDGIPGMGGAKGQN 273


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -1

Query: 525 SPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGN 346
           SP T      +  +++   +   P    S ++SP   +  +  +P TSTT  + +    +
Sbjct: 452 SPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511

Query: 345 STFSSSMYSWHSSAFS 298
           ST SSS+ S  SS  S
Sbjct: 512 STASSSVSSTASSTQS 527


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -1

Query: 525 SPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGN 346
           SP T      +  +++   +   P    S ++SP   +  +  +P TSTT  + +    +
Sbjct: 452 SPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511

Query: 345 STFSSSMYSWHSSAFS 298
           ST SSS+ S  SS  S
Sbjct: 512 STASSSVSSTASSTQS 527


>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 140 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAV-GC 280
           +  Y ACV    R  YQ  + W+D    + YRC   DG+     + GC
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGC 148



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 230 YRCEIRDGKYFIAAVGCRKPKIPENALECHEYI 328
           Y+CEIR GK    AVGC    I EN  + ++ I
Sbjct: 243 YQCEIRPGKRSHRAVGC---SIVENGRDINKVI 272


>U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical
           protein F41H10.4 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +2

Query: 326 IEDENVEFPTCCARLRCVVEVNGERIVQTRGQPGELFPDKPWKGQ--QNEPNPAVVGMSG 499
           IE ENVE  T  A L+ +   N + I+Q   +   L  +   KG+  +N      +G   
Sbjct: 444 IESENVELITRLATLQKIHSENADSILQLESENSRLRREVTEKGELIENLIREKPLGTGF 503

Query: 500 IQQTPVGGEPQGQASP 547
            QQ  +G        P
Sbjct: 504 QQQNNLGSSSSSSVQP 519


>AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin protein
           21 protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -3

Query: 574 RCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLLALPWFIGEQFARLPSGLHYSL 395
           R + ++ + R       A  RC+L +A+  N++ +LVL    WF+   F  L S +HY++
Sbjct: 254 RLAMSIGFYRSYTNAHSAVARCML-SANFLNAKAFLVLYW--WFLLVSFISLCSAIHYTI 310


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 391 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 287
           IYF D  Q    R  +   IF+ F+A  C F   W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
            protein Y39G8C.1 protein.
          Length = 1195

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -3

Query: 577  IRCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLLALPWFIGEQFARLPSGLHY 401
            I C  A+KYSRR L +   TDR          +++W         + E   + P    Y
Sbjct: 1019 INCGLALKYSRRDLCVADYTDRTEHTNQRGVTNKVWFYTNLATRLVSEYRRKFPDVWKY 1077


>AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical
           protein T20H9.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 400 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTSDS 269
           SLS+ FD  T+    +   D++  D F   +  F   WFST+ +
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTAQT 262


>Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical
           protein ZC455.4 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 345 STFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISHL*R 226
           ST   + YS+     S ++GF H    MKY   L +HL R
Sbjct: 11  STLFGNAYSYKFLVISPVYGFSH----MKYMAELANHLAR 46


>AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical
           protein T05G11.3 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 251 GKYFIAAVGCRKPKIPENALECHEYIE-DENVEFPTC-CARLRCVVEVNGERIVQTRGQ 421
           GK+ I+ VG  KPK+   ++     I  +  + F  C C      +   GERIVQ R +
Sbjct: 265 GKFIISQVGDDKPKLTLQSMIVGFIINFNSAIHFLLCYCLHNVFTISECGERIVQKRSR 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,911
Number of Sequences: 27780
Number of extensions: 358759
Number of successful extensions: 1079
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)