Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o23
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   4.8  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = -2

Query: 397  NSTVRLITIFLPNSF*GRALKVVVVSRVRGSACVQLLSKIIDSTM*MSTYITQPYYMSSK 218
            NST+ L  +   N+F  R +  ++++   GSA    LS    ++  +++ + +P Y+ S 
Sbjct: 3902 NSTISLQPVVQFNNFTKREITTILITASDGSAVTTSLSTFYSASS-LASSVVKPLYILST 3960

Query: 217  SQFCITYFL 191
                  +F+
Sbjct: 3961 FFVAAVFFI 3969


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 174 FYILITRSNNFVPLFT 127
           FY  IT   NF+PLFT
Sbjct: 195 FYFFITIVGNFIPLFT 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,047
Number of Sequences: 5004
Number of extensions: 44011
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)