Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o23
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    25   0.57 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.2  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 36  MHNLKKY*NSALLLYILYKCGKFHTPSVQF 125
           ++ + +Y N   L+Y + +CGKF  P   F
Sbjct: 60  LYFVMEYVNGGDLMYQIQQCGKFKEPVAVF 89


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 537 KFLEYDKYNFRFGGSQNNNF 478
           K+  Y+ YN  +  + NNN+
Sbjct: 90  KYSNYNNYNNNYNNNYNNNY 109


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 537 KFLEYDKYNFRFGGSQNNNF 478
           K+  Y+ YN  +  + NNN+
Sbjct: 90  KYSNYNNYNNNYNNNYNNNY 109


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 58  RILHSFSIFSISVGNFILRPCNFRKK 135
           RI H+F  F    GN+ +   NF+ K
Sbjct: 211 RITHNFFYFDPRYGNYNINGFNFQWK 236


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 485 IISMSKYSSEKLNKNQDS*SHYVLLIN 405
           IIS + Y+ +  N N +S   Y  +IN
Sbjct: 303 IISSNNYNYKNYNNNYNSKKLYYNIIN 329


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 485 IISMSKYSSEKLNKNQDS*SHYVLLIN 405
           IIS + Y+ +  N N +S   Y  +IN
Sbjct: 314 IISSNNYNYKNYNNNYNSKKLYYNIIN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,488
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)