Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o18
         (154 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0608 - 35039319-35039903,35040328-35040387                       27   2.1  
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984...    25   8.3  

>03_06_0608 - 35039319-35039903,35040328-35040387
          Length = 214

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 60  KLLSYNVDKRGRCSKFCQFC 119
           K+L YNVD RG C   C  C
Sbjct: 191 KVLGYNVDCRGDCMAQCTRC 210


>03_02_0613 -
           9848514-9848539,9848942-9849200,9849326-9849365,
           9849952-9850117,9850228-9850756
          Length = 339

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 53  TRGTSPVPWY 24
           +RG SPVPWY
Sbjct: 182 SRGVSPVPWY 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,728
Number of Sequences: 37544
Number of extensions: 39619
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)