Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o18
         (154 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT016116-1|AAV37001.1|  875|Drosophila melanogaster LD10035p pro...    27   3.5  
AY061625-1|AAL29173.1|  444|Drosophila melanogaster SD10251p pro...    27   3.5  
AF099909-1|AAD13219.1|  875|Drosophila melanogaster topoisomeras...    27   3.5  
AE014298-867|AAF46144.1|  875|Drosophila melanogaster CG3458-PA ...    27   3.5  

>BT016116-1|AAV37001.1|  875|Drosophila melanogaster LD10035p
           protein.
          Length = 875

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 39  RCTASS*KLLSYNVDKRGRCSKFCQFCHN 125
           +C      LL+++   +GR   FC +C+N
Sbjct: 659 KCPLDDFDLLAFSTGVKGRSYPFCPYCYN 687


>AY061625-1|AAL29173.1|  444|Drosophila melanogaster SD10251p
           protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 39  RCTASS*KLLSYNVDKRGRCSKFCQFCHN 125
           +C      LL+++   +GR   FC +C+N
Sbjct: 228 KCPLDDFDLLAFSTGVKGRSYPFCPYCYN 256


>AF099909-1|AAD13219.1|  875|Drosophila melanogaster topoisomerase
           III protein.
          Length = 875

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 39  RCTASS*KLLSYNVDKRGRCSKFCQFCHN 125
           +C      LL+++   +GR   FC +C+N
Sbjct: 659 KCPLDDFDLLAFSTGVKGRSYPFCPYCYN 687


>AE014298-867|AAF46144.1|  875|Drosophila melanogaster CG3458-PA
           protein.
          Length = 875

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 39  RCTASS*KLLSYNVDKRGRCSKFCQFCHN 125
           +C      LL+++   +GR   FC +C+N
Sbjct: 659 KCPLDDFDLLAFSTGVKGRSYPFCPYCYN 687


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,794,608
Number of Sequences: 53049
Number of extensions: 72717
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 24,988,368
effective HSP length: 31
effective length of database: 23,343,849
effective search space used: 443533131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)