Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o18
         (154 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    26   4.2  
U51993-1|AAB36851.2|  377|Caenorhabditis elegans Hypothetical pr...    25   7.3  

>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  RCTASS*KLLSYNVDKRGRCSKFCQF 116
           +C A    L ++N++ R +C +FC +
Sbjct: 344 KCAACRQSLHTHNINDREQCPRFCDY 369


>U51993-1|AAB36851.2|  377|Caenorhabditis elegans Hypothetical
           protein F56F10.2 protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 123 YDKIDKI*NSALFCRRYNLIISMNSRYIART 31
           Y  ID + N  L C ++N  I  N+  +ART
Sbjct: 113 YLDIDDLLNCKLVCWKWNATIGENASELART 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,882
Number of Sequences: 27780
Number of extensions: 40547
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)