Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o18
         (154 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    19   4.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    19   5.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    19   5.6  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 87  RGRCSKFCQFCHNK 128
           RGRCS + Q   +K
Sbjct: 54  RGRCSSYLQVSGSK 67


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 90  GRCSKFC 110
           GRC +FC
Sbjct: 48  GRCQRFC 54


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 90  GRCSKFC 110
           GRC +FC
Sbjct: 48  GRCQRFC 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,063
Number of Sequences: 438
Number of extensions: 467
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)