Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25o15
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    28   1.6  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.8  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    26   4.8  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   6.4  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   6.4  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 400 LVHQLAQTAISGGHHTDQNREVVLLINVE 486
           L+ ++  T  SG HHTD N +   + NV+
Sbjct: 787 LIDEIDSTEYSGSHHTDDNSDANKVENVK 815


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 301 NRKVRIHTTGSTLILEVIL---RGKIMSILLAQPIIL 402
           N  V +  TG  L++++++     K +SILL+QPI++
Sbjct: 241 NEPVALRLTGKQLLIKLLILLSMKKPISILLSQPILI 277


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 301 NRKVRIHTTGSTLILEVIL---RGKIMSILLAQPIIL 402
           N  V +  TG  L++++++     K +SILL+QPI++
Sbjct: 241 NEPVALRLTGKQLLIKLLILLSMKKPISILLSQPILI 277


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 301 NRKVRIHTTGSTLILEVIL---RGKIMSILLAQPIIL 402
           N  V +  TG  L++++++     K +SILL+QPI++
Sbjct: 241 NEPVALRLTGKQLLIKLLILLSMKKPISILLSQPILI 277


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 238 TPLLMTTEPTATPIPMIPHIINRKVRIHTTGSTLIL 345
           T +L+  EPT+   P+  +++   +R H  G T ++
Sbjct: 589 TEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLV 624


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +1

Query: 397 ILVHQLAQTAISGGHHTDQNREVVLLINVERDLILEKEKAMTVI 528
           + V    +  IS GH  ++  ++ LLI  + +++ +K K +  +
Sbjct: 466 VKVQPSLRICISTGHSAEEIEKLALLIKEKTEIVFDKHKVINQV 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,425
Number of Sequences: 5004
Number of extensions: 32227
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)